View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13462_low_8 (Length: 297)
Name: NF13462_low_8
Description: NF13462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13462_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 30774513 - 30774240
Alignment:
| Q |
7 |
cagaaaagaaattataaaaatgattcaagaagctagagagtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggc |
106 |
Q |
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| T |
30774513 |
cagagaagaaattaacaaaatgattcaagaagctagagagtaccgtgctgaagatgagaaattcctaaggaagtctatggtaatgaatgcattagattgc |
30774414 |
T |
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| Q |
107 |
tgcatttacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggcta |
206 |
Q |
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|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30774413 |
tgcatttacaagttgaggaatggtctaaagattaaggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcactgatgcaattgcagtggcta |
30774314 |
T |
|
| Q |
207 |
caaatttgcttgataagaataatcagcggaatgaaagtaatgttctcgaagatcatatgaagaagcttgaaaat |
280 |
Q |
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| T |
30774313 |
caaatttgcttgataagaataatcagcggaatgaaattcatgttctcgaagatcatatgaagaagcttgaaaat |
30774240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 8615969 - 8615710
Alignment:
| Q |
14 |
gaaattataaaaatgattcaagaagctagag-agtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctgcatt |
112 |
Q |
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||||||| |||| ||||||||||||| |||| ||||| | ||||||||| | |||| |||||||| | | ||||||||||| |||||||| ||||||| |
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| T |
8615969 |
gaaattaaaaaactgattcaagaagc-agaggagtaccgcgctgaagatgaaaaattcctaaggaaggccaaggtaatgaatgaattagatgactgcatt |
8615871 |
T |
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| Q |
113 |
tacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctacaaatt |
212 |
Q |
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| T |
8615870 |
tacaagttgaggaatgctctaaagaataaggatgttgctttaaagctatcatctcaaaaagttgaaaatatcaacaatgcaattactgtggctacaaatt |
8615771 |
T |
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| Q |
213 |
tgcttgataagaataatcagcggaatgaaagta-atgttctcgaagatcatatgaagaagct |
273 |
Q |
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| T |
8615770 |
tgcttgataggaataaccagcagagtg-aagtagaagttctcgaagatcatctgaaggagct |
8615710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 228
Target Start/End: Original strand, 8586673 - 8586834
Alignment:
| Q |
67 |
attcttaaggaagtctatggtaatgaatgcattagatggctgcatttacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatct |
166 |
Q |
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| T |
8586673 |
attcctaaggaaggctaaggtaatgaattcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaactaaagtgctcttct |
8586772 |
T |
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| Q |
167 |
caaaaactcaaaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataa |
228 |
Q |
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| T |
8586773 |
caaaaagttaaaaagatcaatcatgcaattacaatggctacaaatttgcttgataagaataa |
8586834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 16662917 - 16663171
Alignment:
| Q |
22 |
aaaaatgattcaagaagctagagagtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctgcatttacaggttg |
121 |
Q |
| |
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|||| ||||||||||||||| |||||| ||||||||| || |||| |||||||| | | |||||||||||||||||||| ||||||||||| ||| |
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| T |
16662917 |
aaaattgattcaagaagctaaggagtaccatgctgaagatgagaaattcctaaggaaggccaaggtaatgaatgcattagatgactgcatttacaaattg |
16663016 |
T |
|
| Q |
122 |
aggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctacaaatttgcttgata |
221 |
Q |
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|||||||||||||||| || | | || || |||||||| || | |||||| |||||||||||| |||||||| | ||||||| | |||||||| || |
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| T |
16663017 |
aggaatgctctaaagaataagaatgtcaaattaaagctttctttccaaaaaaataaaaagatcaatcatgcaattacggtggctaaagatttgcttcatg |
16663116 |
T |
|
| Q |
222 |
agaataatcagcggaatgaaagta-atgttctcgaagatcatatgaagaagcttga |
276 |
Q |
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|||| || ||| |||||| ||||| ||||||| || |||||| ||||| ||||||| |
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| T |
16663117 |
agaagaaccaggggaatg-aagtagatgttcttgaggatcatctgaaggagcttga |
16663171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 15594292 - 15594081
Alignment:
| Q |
14 |
gaaattataaaaatgattcaagaagctagagagtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctgcattt |
113 |
Q |
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||||||| |||||||||||||||||| || || | ||||||||| || |||| |||||||| | |||||||||||||||||||| ||| ||| |
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| T |
15594292 |
gaaattaaaaaaatgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgttt |
15594193 |
T |
|
| Q |
114 |
acaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctacaaattt |
213 |
Q |
| |
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||| |||||| |||||||| |||| || ||| || || ||||| || || ||| || || | | ||||||||||| ||||||| |||||||||||||||| |
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| T |
15594192 |
acaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaagatcaatggtgcaattacagtggctacaaattt |
15594093 |
T |
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| Q |
214 |
gcttgataagaa |
225 |
Q |
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|||||||||||| |
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| T |
15594092 |
gcttgataagaa |
15594081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 4679628 - 4679679
Alignment:
| Q |
177 |
aaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataa |
228 |
Q |
| |
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|||||||||| ||||||||| ||||||| || || ||||||||||||||||| |
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| T |
4679628 |
aaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataa |
4679679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 28219097 - 28219049
Alignment:
| Q |
89 |
atgaatgcattagatggctgcatttacaggttgaggaatgctctaaaga |
137 |
Q |
| |
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|||||||||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
28219097 |
atgaatgcattagatgactgcgtttacaagttgaggaatgctctaaaga |
28219049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 43743998 - 43743915
Alignment:
| Q |
86 |
gtaatgaatgcattagatggctgcatttacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaa |
169 |
Q |
| |
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||||||||||||||||||| || |||||| ||||||||||||| |||||| || ||| || || |||||||| || |||||| |
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| T |
43743998 |
gtaatgaatgcattagatgaatgggtttacaagttgaggaatgctgtaaagaataaggatgttaaattaaagctttcttctcaa |
43743915 |
T |
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