View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13463_high_3 (Length: 398)

Name: NF13463_high_3
Description: NF13463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13463_high_3
NF13463_high_3
[»] chr4 (21 HSPs)
chr4 (9-380)||(26081557-26081930)
chr4 (60-337)||(26057935-26058212)
chr4 (161-293)||(53981576-53981707)
chr4 (175-293)||(20193139-20193256)
chr4 (13-295)||(13999342-13999620)
chr4 (175-284)||(19569997-19570105)
chr4 (96-296)||(53146597-53146792)
chr4 (77-216)||(12747176-12747310)
chr4 (223-295)||(42120274-42120346)
chr4 (9-68)||(12659915-12659974)
chr4 (222-293)||(26996713-26996783)
chr4 (9-63)||(16326448-16326502)
chr4 (178-291)||(25152376-25152489)
chr4 (9-68)||(1874724-1874783)
chr4 (223-295)||(1874535-1874607)
chr4 (180-216)||(2924778-2924814)
chr4 (9-68)||(23193458-23193517)
chr4 (19-63)||(7740650-7740694)
chr4 (223-295)||(12659726-12659798)
chr4 (223-295)||(30674239-30674311)
chr4 (9-68)||(30674428-30674488)
[»] chr7 (16 HSPs)
chr7 (161-293)||(42208389-42208520)
chr7 (161-293)||(16647904-16648035)
chr7 (161-293)||(17622265-17622396)
chr7 (161-293)||(25498536-25498667)
chr7 (161-293)||(32147958-32148089)
chr7 (161-293)||(42162802-42162933)
chr7 (161-293)||(571231-571362)
chr7 (175-284)||(7578030-7578138)
chr7 (96-285)||(5997740-5997926)
chr7 (175-284)||(20124773-20124881)
chr7 (9-68)||(341022-341081)
chr7 (9-62)||(8247481-8247534)
chr7 (179-216)||(34325828-34325865)
chr7 (223-295)||(8247657-8247729)
chr7 (96-216)||(23819058-23819173)
chr7 (226-295)||(340833-340902)
[»] chr5 (14 HSPs)
chr5 (161-293)||(30958144-30958275)
chr5 (161-293)||(28367528-28367659)
chr5 (161-241)||(1532254-1532334)
chr5 (150-293)||(19780549-19780691)
chr5 (175-285)||(26460490-26460599)
chr5 (179-247)||(17945248-17945316)
chr5 (9-68)||(16672880-16672939)
chr5 (9-68)||(21171915-21171974)
chr5 (9-68)||(23054106-23054165)
chr5 (9-68)||(35265269-35265328)
chr5 (221-293)||(24213835-24213906)
chr5 (161-216)||(18080545-18080600)
chr5 (223-295)||(35265080-35265152)
chr5 (223-295)||(16673056-16673128)
[»] chr3 (17 HSPs)
chr3 (161-293)||(2169198-2169329)
chr3 (161-293)||(13981203-13981334)
chr3 (161-293)||(13990313-13990444)
chr3 (161-293)||(23343857-23343988)
chr3 (161-293)||(9725171-9725302)
chr3 (165-285)||(26830659-26830779)
chr3 (204-293)||(40801185-40801273)
chr3 (9-68)||(49487453-49487512)
chr3 (186-280)||(12990393-12990486)
chr3 (161-283)||(17032601-17032721)
chr3 (175-285)||(44122575-44122684)
chr3 (17-122)||(20454058-20454163)
chr3 (9-68)||(15753224-15753283)
chr3 (9-68)||(21882795-21882854)
chr3 (223-295)||(49487264-49487336)
chr3 (226-295)||(21882974-21883043)
chr3 (77-125)||(17032522-17032570)
[»] chr2 (22 HSPs)
chr2 (161-293)||(7910510-7910641)
chr2 (161-293)||(22429829-22429960)
chr2 (161-293)||(22435423-22435554)
chr2 (175-293)||(1525229-1525346)
chr2 (161-293)||(635763-635894)
chr2 (161-293)||(14898264-14898395)
chr2 (161-293)||(43776473-43776604)
chr2 (13-295)||(16443864-16444142)
chr2 (77-216)||(19088891-19089025)
chr2 (16-296)||(17320061-17320345)
chr2 (175-293)||(25231490-25231607)
chr2 (175-277)||(34574149-34574251)
chr2 (9-125)||(5836749-5836864)
chr2 (9-68)||(19438265-19438324)
chr2 (9-68)||(25445787-25445846)
chr2 (9-68)||(43288118-43288177)
chr2 (175-293)||(19911775-19911892)
chr2 (161-214)||(21290151-21290204)
chr2 (175-293)||(11311561-11311675)
chr2 (226-284)||(7385399-7385456)
chr2 (19-67)||(13156103-13156151)
chr2 (223-295)||(43287929-43288001)
[»] chr1 (12 HSPs)
chr1 (161-293)||(15716105-15716236)
chr1 (161-293)||(33493483-33493614)
chr1 (181-293)||(16168261-16168372)
chr1 (199-293)||(3614836-3614929)
chr1 (150-247)||(15552341-15552438)
chr1 (150-283)||(29547227-29547358)
chr1 (9-68)||(11659549-11659608)
chr1 (9-68)||(18535699-18535758)
chr1 (150-216)||(145991-146057)
chr1 (22-68)||(37357458-37357504)
chr1 (222-293)||(17721376-17721446)
chr1 (179-216)||(11442289-11442326)
[»] scaffold0004 (1 HSPs)
scaffold0004 (161-293)||(346218-346349)
[»] scaffold0461 (1 HSPs)
scaffold0461 (161-293)||(13137-13268)
[»] chr8 (11 HSPs)
chr8 (16-295)||(32722175-32722445)
chr8 (179-293)||(17909240-17909353)
chr8 (210-293)||(41048389-41048471)
chr8 (77-216)||(28348944-28349078)
chr8 (175-284)||(10738475-10738583)
chr8 (175-283)||(34191946-34192054)
chr8 (161-216)||(23429045-23429100)
chr8 (9-68)||(30714945-30715004)
chr8 (9-125)||(30722666-30722782)
chr8 (223-285)||(30722543-30722605)
chr8 (223-295)||(30714756-30714828)
[»] chr6 (4 HSPs)
chr6 (179-293)||(17270739-17270852)
chr6 (175-284)||(19441684-19441792)
chr6 (222-284)||(25395262-25395323)
chr6 (176-284)||(6932534-6932641)
[»] scaffold0014 (2 HSPs)
scaffold0014 (9-68)||(111246-111305)
scaffold0014 (223-295)||(111422-111494)
[»] scaffold0102 (1 HSPs)
scaffold0102 (9-68)||(13397-13456)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 26081930 - 26081557
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagggcactgtcgtattttcctaattataattatcatggtattt 108  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26081930 caagaaaatgatgaacaacttaaattggtcctgaagtat-atatcttagttcaaatgagggcactgtcgtattttcctaattataattatcatggtattt 26081832  T
Q  109 tatttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatattagagaaacaacaatatcatccgatcatttgaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  26081831 tatttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttgaattttagagaaacaacaatatcaaccgatcatttgaa 26081732  T
Q  209 aatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaa---acttgttgttttcttatagcaaccct 305  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  26081731 aatgttaggactgcgtcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaattacttgttgttttcttatagcaaccct 26081632  T
Q  306 agaaataattcaatatgaagataatatctcaagcagttggtatttcttttctagtaagattttattaaggcatat 380  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26081631 agaaataactcaatatgaagataatatctcaagcagttggtatttcttttctaataagattttattaaggcatat 26081557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 60 - 337
Target Start/End: Complemental strand, 26058212 - 26057935
Alignment:
Q  60 caaatgagggcactgtcgtattttcctaattataattatcatggtattttatttttgtcaatattattaataaacataaagttattggtacaaagtcatg 159  Q
    |||||||||| |||  ||||||||||||||||||  |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |    
T  26058212 caaatgagggtactaacgtattttcctaattatatatatcgtggtattttatttttgtcaatattattattaaacattaagttattggtacaaagtcaag 26058113  T
Q  160 tatacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattg 259  Q
    |||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||| | ||||| ||| ||||     
T  26058112 tatacaatttgaattttagaaaaacaacaatatcatcccatcatttgaaaatgttaggactacatcaagaaagaggagaatgtttttttactaaggatta 26058013  T
Q  260 taattttaaacatacaagaaacttgttgttttcttatagcaaccctagaaataattcaatatgaagataatatctcaa 337  Q
     ||||||| ||||||||||||||||| |||||||||| | |||||| | || || |||||||||||||||||||||||    
T  26058012 aaattttacacatacaagaaacttgtggttttcttatggaaaccctggcaacaactcaatatgaagataatatctcaa 26057935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 53981576 - 53981707
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  53981576 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 53981674  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  53981675 gatttcacacatacaagaaacttgtggttttct 53981707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 20193256 - 20193139
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||| |||||||| |||| | |||| | ||||||    
T  20193256 ttagagaaacaacaatatcatccgatcatttcaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattatgatttcacacatac 20193158  T
Q  275 aagaaacttgttgttttct 293  Q
    ||||||||||| |||||||    
T  20193157 aagaaacttgtggttttct 20193139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 13999342 - 13999620
Alignment:
Q  13 aatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagggcactgtcgtattttcctaattataattatcatg--gtatttta 110  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||   ||||||   ||||||||  |||  ||  ||| ||||    
T  13999342 aatatgatgaacaatttgaattggtcctgaagtatcatatcttagttcaagtgaggacactaatgtatttcgttaattatatatattttgtggtagttta 13999441  T
Q  111 tttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaa 210  Q
    |||| |||||||||| |||   ||||| |  ||||| | ||||||||   |||||| ||  || |||||||||||||||||| ||  |||||| ||||||    
T  13999442 tttt-gtcaatattagtaa---acataga--tattgttgcaaagtcaaacatacaagtttcatcttagagaaacaacaatattatttgatcatatgaaaa 13999535  T
Q  211 tgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||  ||| |||||| |||||| ||||||||||||||||||||||  | |||||| | |||||| ||||| || |||||||||    
T  13999536 tgttaacactacatcaaagaagtgaagaatgctcttttattaaagatgatgattttacaaatacaataaactcgtggttttctta 13999620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 19569997 - 19570105
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||| ||||||||| || |||||||| |||| |||||||| ||||||    
T  19569997 ttagagaaacaacaatatcacctgatcatttgaaaatgttagcactacatcaaggaaatggagaatgttc-tttattaaggattctaattttacacatac 19570095  T
Q  275 aagaaacttg 284  Q
    ||||||||||    
T  19570096 aagaaacttg 19570105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 96 - 296
Target Start/End: Complemental strand, 53146792 - 53146597
Alignment:
Q  96 tatcatggtattttatttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatattagagaaacaacaatatcat 195  Q
    |||||||||||||||||||||||||||||| |||     | | ||  ||||| |||||||||   ||| |||||  || ||| | |||||||| ||||||    
T  53146792 tatcatggtattttatttttgtcaatattagtaa-----acacagacattggaacaaagtcaaacatataatttgtatcttaaataaacaacactatcat 53146698  T
Q  196 ccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    | || |||||| ||||||||| ||| |||||| ||||||||||||| | ||||||| | |||| | |||||| |  ||||||||||||||  ||||||||    
T  53146697 cagagcatttggaaatgttagcactacatcaatgaagtggagaatgatattttatttaggattatgattttacatgtacaagaaacttgtgattttctta 53146598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 12747310 - 12747176
Alignment:
Q  77 gtattttcctaattataattatcatggtattttatttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatatt 176  Q
    ||||||| || ||||||  |||||||||||||||||||||||||| ||| |||     ||| || |||||   ||||||||   || ||||||| || ||    
T  12747310 gtattttgcttattatatatatcatggtattttatttttgtcaatgttagtaa-----atacagatattgcagcaaagtcaaacatgcaatttatatctt 12747216  T
Q  177 agagaaacaacaatatcatccgatcatttgaaaatgttag 216  Q
    | |||||||||| |||||||||||||||||||||||||||    
T  12747215 aaagaaacaacagtatcatccgatcatttgaaaatgttag 12747176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 42120346 - 42120274
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    ||||| ||||||||||||| |||||||||||||||  | |||||| | ||||||||||||||||| |||||||    
T  42120346 atcaatgaagtggagaatgatcttttattaaagatgatgattttacaaatacaagaaacttgttgatttctta 42120274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 12659974 - 12659915
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  12659974 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 12659915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 26996713 - 26996783
Alignment:
Q  222 catcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttct 293  Q
    ||||||||||||||||||||||| |||||||| |||| | |||||| ||||||||||||||| | |||||||    
T  26996713 catcaaggaagtggagaatgctc-tttattaaggattatgattttatacatacaagaaacttatagttttct 26996783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 16326502 - 16326448
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaa 63  Q
    |||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  16326502 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaa 16326448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 25152376 - 25152489
Alignment:
Q  178 gagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaag 277  Q
    |||||| || ||||||||||||||||||||||||| ||| ||| |  ||| ||| || | ||||| |||||||||| |||  | |||||| |||||||||    
T  25152376 gagaaataagaatatcatccgatcatttgaaaatgctagcactacggcaaagaattgaataatgcccttttattaaggatgatgattttatacatacaag 25152475  T
Q  278 aaacttgttgtttt 291  Q
    ||| |||| |||||    
T  25152476 aaagttgtggtttt 25152489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 1874783 - 1874724
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||| ||||| |||||||||||||||| ||||    
T  1874783 caagaaaatgataaacaacttgaattggtcctaaagtaccatatcttagttcaaacgagg 1874724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 1874607 - 1874535
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| |||| ||||||||||||| |||  | |||||| |  |||||||||||||||| |||||||    
T  1874607 atcaaggaagtgaagaacgctcttttattaaggatgatgattttacaagtacaagaaacttgttgatttctta 1874535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 2924814 - 2924778
Alignment:
Q  180 gaaacaacaatatcatccgatcatttgaaaatgttag 216  Q
    |||| ||||||||||||||||||||||||||||||||    
T  2924814 gaaataacaatatcatccgatcatttgaaaatgttag 2924778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 23193458 - 23193517
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||| ||| ||||| |||||||||| |||||||||||||||| ||||    
T  23193458 caagaaaatgataaacagcttgaattgatcctgaagtaccatatcttagttcaaacgagg 23193517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 7740694 - 7740650
Alignment:
Q  19 atgaacaacttaaattggtcctgaagtatcatatcttagttcaaa 63  Q
    |||| |||||| |||||||| |||||||||||||||| |||||||    
T  7740694 atgaccaacttgaattggtcatgaagtatcatatcttggttcaaa 7740650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 12659798 - 12659726
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| ||||| ||||||||| || |||  | |||||| |  |||||||||||||||| |||||||    
T  12659798 atcaaggaagtgaagaattctcttttatcaaggatgatgattttacaagtacaagaaacttgttgatttctta 12659726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 30674311 - 30674239
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| |||| |||||||||| || |||  | |||||| |  |||||||||||||||| |||||||    
T  30674311 atcaaggaagtgaagaacgctcttttatcaaggatgatgattttacaagtacaagaaacttgttgatttctta 30674239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 30674488 - 30674428
Alignment:
Q  9 caagaatatgatgaacaactt-aaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||| | |||||| |||||||||||||||| ||||    
T  30674488 caagaaaatgataaacaacttgaaattggttcagaagtaccatatcttagttcaaacgagg 30674428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 42208389 - 42208520
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  42208389 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 42208487  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  42208488 gatttcacacatacaagaaacttgtggttttct 42208520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 16647904 - 16648035
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  16647904 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaatatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 16648002  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  16648003 gatttcacacatacaagaaacttgtggttttct 16648035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 17622265 - 17622396
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  17622265 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaatatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 17622363  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  17622364 gatttcacacatacaagaaacttgtggttttct 17622396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 25498536 - 25498667
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  25498536 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaatatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 25498634  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  25498635 gatttcacacatacaagaaacttgtggttttct 25498667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 32147958 - 32148089
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||| |||||||||||| |||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  32147958 atacaatttgtatcttagagaaacaacaatattatccgatcatttcaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 32148056  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  32148057 gatttcacacatacaagaaacttgtggttttct 32148089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 42162933 - 42162802
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||| |||||||| |||| |    
T  42162933 atacaatttgtatcttagagaaacaacactatcatccgatcgtttgaaaatgttagcactacatcaaggaagtggataatgctc-tttattaaggattat 42162835  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  42162834 gatttcacacatacaagaaacttgtggttttct 42162802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 571362 - 571231
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || ||||||||||||| ||||||||| |||||||||| ||||||| ||| |  |||||||||||||||||||| |||||||| |||| |    
T  571362 atacaatttgtatcttagagaaacaacgatatcatccaatcatttgaatatgttagcactacgccaaggaagtggagaatgctc-tttattaaggattat 571264  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  571263 gatttcacacatacaagaaacttgtggttttct 571231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 7578030 - 7578138
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    ||||||||| |||||||||| |||||| |||||||||| ||  ||  ||||||||||||||||||||||| || |||||||||| | |||||| ||||||    
T  7578030 ttagagaaagaacaatatcacccgatcgtttgaaaatgctaacaccacatcaaggaagtggagaatgctc-ttcattaaagattatgattttatacatac 7578128  T
Q  275 aagaaacttg 284  Q
    ||||||||||    
T  7578129 aagaaacttg 7578138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 5997740 - 5997926
Alignment:
Q  96 tatcatggtattttatttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatattagagaaacaacaata--tc 193  Q
    ||||||||||||||||| |||||||||||| |||   ||||| |  |||||  ||||| ||| | | |||||||| || ||||| |||||||||||  ||    
T  5997740 tatcatggtattttattcttgtcaatattactaa---acataga--tattgaaacaaaatcaagca-acaatttatattttagaaaaacaacaatacatc 5997833  T
Q  194 atccga-tcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgt 285  Q
    || ||| ||||||| ||||||||| ||| |||||||||| ||||||||| | ||||| ||||||| ||  |||| ||||||||||||||||||    
T  5997834 attcgaatcatttgcaaatgttagcactacatcaaggaactggagaatgttattttaataaagatggtggttttcaacatacaagaaacttgt 5997926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 20124773 - 20124881
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    ||||||||| ||||||||||| | ||| |||||||||| ||  ||  |||||  |||||||||||||||| ||||||||| ||| | |||||| ||||||    
T  20124773 ttagagaaagaacaatatcattcaatcgtttgaaaatgctaacaccacatcatagaagtggagaatgctc-tttattaaatattatgattttatacatac 20124871  T
Q  275 aagaaacttg 284  Q
     |||||||||    
T  20124872 gagaaacttg 20124881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 341081 - 341022
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| ||||||| |||||||| |||||||||||||||| ||||    
T  341081 caagaaaatgataaacaacttgaattggttctgaagtaccatatcttagttcaaacgagg 341022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 8247481 - 8247534
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaa 62  Q
    |||||| ||||| |||| ||| |||||||||||||||| |||||||||||||||    
T  8247481 caagaaaatgataaacagcttgaattggtcctgaagtaccatatcttagttcaa 8247534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 34325828 - 34325865
Alignment:
Q  179 agaaacaacaatatcatccgatcatttgaaaatgttag 216  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34325828 agaaacaacagtatcatccgatcatttgaaaatgttag 34325865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 8247657 - 8247729
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| |||| ||||||||||||| |||  | |||||| |  |||||||||||||||| |||||||    
T  8247657 atcaaggaagtgaagaacgctcttttattaaggatgatgattttacaagtacaagaaacttgttgatttctta 8247729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 23819173 - 23819058
Alignment:
Q  96 tatcatggtattttatttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatattagagaaacaacaatatcat 195  Q
    |||||||||||||||||||||||||| ||| |||     ||| |  |||||   ||||||||   |||||||||  || ||| |||||||||| ||||||    
T  23819173 tatcatggtattttatttttgtcaatgttagtaa-----atacaaatattgcagcaaagtcaaaaatacaatttgtatcttaaagaaacaacactatcat 23819079  T
Q  196 ccgatcatttgaaaatgttag 216  Q
    |||||||||| ||||||||||    
T  23819078 ccgatcatttaaaaatgttag 23819058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 340902 - 340833
Alignment:
Q  226 aaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    ||||||||| |||| |||||||||| || ||| || |||||| |  |||||||||||||||| |||||||    
T  340902 aaggaagtgaagaacgctcttttatcaaggatggtgattttacaagtacaagaaacttgttgatttctta 340833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 30958275 - 30958144
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  30958275 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 30958177  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  30958176 gatttcacacatacaagaaacttgtggttttct 30958144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 28367659 - 28367528
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || ||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  28367659 atacaatttgtatcttagagaaacaacgatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 28367561  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  28367560 gatttcacacatacaagaaacttgtggttttct 28367528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 1532334 - 1532254
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatg 241  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||  |||   ||||||||||||||||||    
T  1532334 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttaacactatgtcaaggaagtggagaatg 1532254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 293
Target Start/End: Complemental strand, 19780691 - 19780549
Alignment:
Q  150 caaagtcatgtatacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctctttta 249  Q
    |||||||| | |||||||||   | ||||||||| ||||||||||| | ||| |||||||||| ||  ||  |||||||||| |||||||||||  ||||    
T  19780691 caaagtcaagcatacaatttgtttcttagagaaagaacaatatcattcaatcgtttgaaaatgctaacaccacatcaaggaattggagaatgct-attta 19780593  T
Q  250 ttaaagattgtaattttaaacatacaagaaacttgttgttttct 293  Q
    ||||||||||| |||||| |||||||||||| |||  |||||||    
T  19780592 ttaaagattgtgattttatacatacaagaaagttgcagttttct 19780549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 26460599 - 26460490
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    |||| |||||||||||||||||||||||||||||||  |||  ||| ||||||||||||| | ||  |||||| ||||| |||| |||||||| ||||||    
T  26460599 ttagggaaacaacaatatcatccgatcatttgaaaa-attaaaactacatcaaggaagtgaaaaagactctttcattaaggattataattttacacatac 26460501  T
Q  275 aagaaacttgt 285  Q
    |||||| ||||    
T  26460500 aagaaatttgt 26460490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 17945248 - 17945316
Alignment:
Q  179 agaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttt 247  Q
    ||||||||||||||||||| ||||||| |||||||||| ||| |||||||||| | |||||||||||||    
T  17945248 agaaacaacaatatcatcctatcattttaaaatgttagcactacatcaaggaaatagagaatgctcttt 17945316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 16672880 - 16672939
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  16672880 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 16672939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 21171974 - 21171915
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  21171974 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 21171915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 23054165 - 23054106
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  23054165 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 23054106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 35265328 - 35265269
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  35265328 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 35265269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 24213906 - 24213835
Alignment:
Q  221 gcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttct 293  Q
    |||||||| |||| |||||| |||||| |||||||||| | |||||| ||||||||||||||||| |||||||    
T  24213906 gcatcaagaaagtagagaatactcttt-attaaagattatgattttatacatacaagaaacttgtggttttct 24213835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 18080600 - 18080545
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttag 216  Q
    |||||||||  || ||| |||||||||| |||||||||||||||||||||||||||    
T  18080600 atacaatttgtatcttaaagaaacaacagtatcatccgatcatttgaaaatgttag 18080545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 35265152 - 35265080
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| |||| ||||||||||||| |||  | |||||| |  |||||||||||||||| |||||||    
T  35265152 atcaaggaagtgaagaacgctcttttattaaggatgatgattttacaagtacaagaaacttgttgatttctta 35265080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 16673056 - 16673128
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| |||| |||||||||| || |||  | |||||| |  |||||||||||||||| |||||||    
T  16673056 atcaaggaagtgaagaacgctcttttatcaaggatgatgattttacaagtacaagaaacttgttgatttctta 16673128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 2169329 - 2169198
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  2169329 atacaatttgtatattagagaaacaacaatatcatccgatcatttgaatatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 2169231  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  2169230 gatttcacacatacaagaaacttgtggttttct 2169198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 13981334 - 13981203
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  13981334 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 13981236  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | | ||||||||||||||| |||||||    
T  13981235 gatttcacatatacaagaaacttgtggttttct 13981203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 13990313 - 13990444
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  13990313 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaatatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 13990411  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  13990412 gatttcacacatacaagaaacttgtggttttct 13990444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 23343857 - 23343988
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  23343857 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaatatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 23343955  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  23343956 gatttcacacatacaagaaacttgtggttttct 23343988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 9725302 - 9725171
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || ||||||||||||| |||||||| ||||||||||||||||||| ||| | |||||||| |||||||||||| |||||||| |||| |    
T  9725302 atacaatttgtatcttagagaaacaacgatatcatctgatcatttgaaaatgttagcactacgtcaaggaaatggagaatgctc-tttattaaggattat 9725204  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  9725203 gatttcacacatacaagaaacttgtggttttct 9725171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 285
Target Start/End: Original strand, 26830659 - 26830779
Alignment:
Q  165 aatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaatt 264  Q
    |||||| || |||||||||||||||| |||   ||||||||||||||||||| ||| |||||| |||||||  |||| | |||||| ||||||| | |||    
T  26830659 aatttatattttagagaaacaacaatttcagttgatcatttgaaaatgttagcactacatcaatgaagtgggaaatgttattttataaaagattctgatt 26830758  T
Q  265 ttaaacatacaagaaacttgt 285  Q
    ||| |||||||||||||||||    
T  26830759 ttacacatacaagaaacttgt 26830779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 293
Target Start/End: Complemental strand, 40801273 - 40801185
Alignment:
Q  204 ttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttct 293  Q
    ||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| | |||| | ||||||||||||||||| |||||||    
T  40801273 ttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattatgatttcacacatacaagaaacttgtggttttct 40801185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 49487512 - 49487453
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  49487512 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 49487453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 280
Target Start/End: Original strand, 12990393 - 12990486
Alignment:
Q  186 acaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaa 280  Q
    ||||||||| || |||||||||||||| ||  ||  ||| ||||||||||||||||||| ||||||||||||| | || ||| ||||||||||||    
T  12990393 acaatatcacccaatcatttgaaaatgctaacaccacatgaaggaagtggagaatgctc-tttattaaagattatgatcttatacatacaagaaa 12990486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 283
Target Start/End: Original strand, 17032601 - 17032721
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || ||||||||| |||||||||||  ||||||| ||||||||||| ||| ||||||||||| | ||||||||| || ||||  |||| |    
T  17032601 atacaatttgtatcttagagaaataacaatatcatttgatcatt-gaaaatgttagcactacatcaaggaagagaagaatgctc-ttcattatggattat 17032698  T
Q  261 aattttaaacatacaagaaactt 283  Q
     |||| | |||||||||||||||    
T  17032699 tatttcacacatacaagaaactt 17032721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 44122684 - 44122575
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    ||||||||| ||||||||||  | ||| |||||||||| ||  ||   | ||||||| ||||||||||||||| |||||||||| | |||||| ||||||    
T  44122684 ttagagaaagaacaatatcactcaatcgtttgaaaatgctaacaccataacaaggaactggagaatgctcttt-attaaagattatgattttatacatac 44122586  T
Q  275 aagaaacttgt 285  Q
    |||||||||||    
T  44122585 aagaaacttgt 44122575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 20454058 - 20454163
Alignment:
Q  17 tgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagggcactgtcgtattttcctaattataattatcatggtattttatttttg 116  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||| |||| || |   |||| ||  |||||||| | ||  ||||||||| ||||||    
T  20454058 tgatgaacaactttaattggttatgaagtatcatatcttagttcaaaggaggccattaatgtatcttattaattatattaattgtggtattttctttttg 20454157  T
Q  117 tcaata 122  Q
    ||||||    
T  20454158 tcaata 20454163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 15753283 - 15753224
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||| ||||||| |||||||||||||||| ||||    
T  15753283 caagaaaatgataaacaacttgaattggtcttgaagtaccatatcttagttcaaacgagg 15753224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 21882795 - 21882854
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| ||||||| |||||||| |||||||||||||||| ||||    
T  21882795 caagaaaatgataaacaacttgaattggttctgaagtaccatatcttagttcaaacgagg 21882854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 49487336 - 49487264
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| |||| ||||||||||||| |||  | |||||| |  |||||||||||||||| |||||||    
T  49487336 atcaaggaagtgaagaacgctcttttattaaggatgatgattttacaagtacaagaaacttgttgatttctta 49487264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 21882974 - 21883043
Alignment:
Q  226 aaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    ||||||||| |||| |||||||||| || ||| || |||||| |  |||||||||||||||| |||||||    
T  21882974 aaggaagtgaagaacgctcttttatcaaggatggtgattttacaagtacaagaaacttgttgatttctta 21883043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 17032522 - 17032570
Alignment:
Q  77 gtattttcctaattataattatcatggtattttatttttgtcaatatta 125  Q
    ||||||| || ||||||  |||| |||||||||||||||||||||||||    
T  17032522 gtattttgcttattatatatatcgtggtattttatttttgtcaatatta 17032570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 7910641 - 7910510
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  7910641 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 7910543  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  7910542 gatttcacacatacaagaaacttgtggttttct 7910510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 22429829 - 22429960
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  22429829 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 22429927  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  22429928 gatttcacacatacaagaaacttgtggttttct 22429960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 22435423 - 22435554
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  22435423 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 22435521  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  22435522 gatttcacacatacaagaaacttgtggttttct 22435554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 1525229 - 1525346
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| | |||| | ||||||    
T  1525229 ttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattatgatttcacacatac 1525327  T
Q  275 aagaaacttgttgttttct 293  Q
    ||||||||||| |||||||    
T  1525328 aagaaacttgtggttttct 1525346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 635763 - 635894
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  635763 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaatatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 635861  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  635862 gatttcacacatacaagaaacttgtggttttct 635894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 14898264 - 14898395
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  14898264 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaatatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 14898362  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  14898363 gatttcacacatacaagaaacttgtggttttct 14898395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 43776473 - 43776604
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || ||||||||||||  |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  43776473 atacaatttgtatcttagagaaacaatgatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 43776571  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  43776572 gatttcacacatacaagaaacttgtggttttct 43776604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 16444142 - 16443864
Alignment:
Q  13 aatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagggcactgtcgtattttcctaattataattatcatg--gtatttta 110  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||| || ||||| ||||   |||||||  ||||||||  |||  ||  ||| ||||    
T  16444142 aatatgatgaacaattcgaattggtcctgaagtatcatatcttagtttaagtgaggacactaatgtattttgttaattatatatattttgtggtagttta 16444043  T
Q  111 tttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaa 210  Q
    |||| |||||||||| |||   ||||| |  |||||   ||||||||   |||||| ||  || |||||||||||||||||| ||  |||||| || |||    
T  16444042 tttt-gtcaatattagtaa---acataga--tattgtggcaaagtcaaacatacaagtttcatcttagagaaacaacaatattatttgatcatatggaaa 16443949  T
Q  211 tgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
     ||||  ||| |||||| |||||| |||||||||||||||||| ||| |  |||||| | |||||||||||| || |||||||||    
T  16443948 cgttaacactacatcaaagaagtgaagaatgctcttttattaaggatggagattttacaaatacaagaaactcgtggttttctta 16443864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 19088891 - 19089025
Alignment:
Q  77 gtattttcctaattataattatcatggtattttatttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatatt 176  Q
    ||||||| || ||||||  || ||||||||||||||||||||||| ||| ||| | |||||    ||||||  |||||||| | |||||||||  || ||    
T  19088891 gtattttgcttattatatataccatggtattttatttttgtcaatgttagtaa-atacata----tattggagcaaagtcaagcatacaatttgtatctt 19088985  T
Q  177 agagaaacaacaatatcatccgatcatttgaaaatgttag 216  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  19088986 aaagaaacaacaatatcatccgatcatttgaaaatgttag 19089025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 17320345 - 17320061
Alignment:
Q  16 atgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagggcactgtcgtattttcctaattata-at-tatcatggtattttattt 113  Q
    ||||||||||| || | |||||||||||||| |||||||||  | | |||| | ||||   ||||||| |||| |||| || |||| || ||||||||||    
T  17320345 atgatgaacaa-ttgagttggtcctgaagtaccatatcttaacttagatgaagacactaatgtattttgctaactatatatatatcgtgatattttattt 17320247  T
Q  114 ttgtcaatat-tattaataaacataaagttattggtacaaagtcatgtatacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatg 212  Q
    |||| ||||| ||||| |||||||| |  ||||||  ||||||||    ||||||||  || |||||||||||||||||||||||||||||||  |||||    
T  17320246 ttgtgaatatatattagtaaacataga--tattggagcaaagtcaaacttacaatttgtatcttagagaaacaacaatatcatccgatcatttagaaatg 17320149  T
Q  213 tt-aggactgcatcaaggaagtggagaatgctcttttattaaagattgtaat---tttaaacatacaagaaacttgttgttttcttat 296  Q
    || |  |||  |||| | |||||||| ||||||||||||||| |||| | ||   |||| |||||||||||| |||  ||||||||||    
T  17320148 tttaacactatatcaggaaagtggaggatgctcttttattaaggattatgatcagtttacacatacaagaaagttggagttttcttat 17320061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 25231490 - 25231607
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    ||||||||| ||||||||||  | ||  |||||||||| ||  || |||||||||||||||||||||||| ||||||||| ||| | |||||| ||||||    
T  25231490 ttagagaaagaacaatatcactcaattgtttgaaaatgctaacaccgcatcaaggaagtggagaatgctc-tttattaaatattatgattttatacatac 25231588  T
Q  275 aagaaacttgttgttttct 293  Q
    ||||||||||  |||||||    
T  25231589 aagaaacttgcggttttct 25231607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 34574251 - 34574149
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    |||||||||| ||||||||||| ||||||||| ||||||||| ||| ||||||||||||  |||||| ||| ||||||| |||| | |||||| || |||    
T  34574251 ttagagaaactacaatatcatctgatcatttgtaaatgttagcactacatcaaggaagtaaagaatgttctattattaaggattatgattttacacgtac 34574152  T
Q  275 aag 277  Q
    |||    
T  34574151 aag 34574149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 5836864 - 5836749
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagggcactgtcgtattttcctaattataattatcatggtattt 108  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| |||  || |   |||||||  |||||||| ||||  ||||||||    
T  5836864 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagaacattaatgtattttgttaattatatttattgtggtattt 5836765  T
Q  109 tatttttgtcaatatta 125  Q
    |  ||||||||||||||    
T  5836764 t-gttttgtcaatatta 5836749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 19438324 - 19438265
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  19438324 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 19438265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 25445846 - 25445787
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  25445846 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 25445787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 43288177 - 43288118
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  43288177 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 43288118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 19911775 - 19911892
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    ||||||||  ||||||| || || ||||||| |||||| ||  ||  ||||||||||||||||||||||| ||||||||||||| | || ||| || |||    
T  19911775 ttagagaaggaacaataacacccaatcatttaaaaatggtaacaccacatcaaggaagtggagaatgctc-tttattaaagattatgatcttacacgtac 19911873  T
Q  275 aagaaacttgttgttttct 293  Q
    ||||||| ||| |||||||    
T  19911874 aagaaacctgtagttttct 19911892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 21290204 - 21290151
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgtt 214  Q
    |||||||||  || ||| ||||||||||||||||||||||||||||||||||||    
T  21290204 atacaatttgtatcttacagaaacaacaatatcatccgatcatttgaaaatgtt 21290151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 11311561 - 11311675
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    ||||||||| ||||||||||| | ||  |||||||||| ||  ||  |||||||||||||||||||| || ||||||||||||| | |||||| ||  ||    
T  11311561 ttagagaaagaacaatatcattc-attgtttgaaaatgctaacaccacatcaaggaagtggagaatgttc-tttattaaagattatgattttatac--ac 11311656  T
Q  275 aagaaacttgttgttttct 293  Q
    |||||||||||| ||||||    
T  11311657 aagaaacttgttattttct 11311675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 7385456 - 7385399
Alignment:
Q  226 aaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttg 284  Q
    |||||||||||||||||||||| ||||||||||   |||||| ||||||||||||||||    
T  7385456 aaggaagtggagaatgctcttt-attaaagattaagattttatacatacaagaaacttg 7385399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 13156103 - 13156151
Alignment:
Q  19 atgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgag 67  Q
    |||||||||||||||| ||  ||||||||||||||||| ||||||||||    
T  13156103 atgaacaacttaaatttgttatgaagtatcatatcttatttcaaatgag 13156151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 43288001 - 43287929
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| |||| |||||||||| || |||  | |||||| |  |||||||||||||||| |||||||    
T  43288001 atcaaggaagtgaagaacgctcttttatcaaggatgatgattttacaagtacaagaaacttgttgatttctta 43287929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 293
Target Start/End: Original strand, 15716105 - 15716236
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  15716105 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 15716203  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  15716204 gatttcacacatacaagaaacttgtggttttct 15716236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 33493614 - 33493483
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  33493614 atacaatttgtatcttagagaaacaacaatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 33493516  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  33493515 gatttcacacatacaagaaacttgtggttttct 33493483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 16168261 - 16168372
Alignment:
Q  181 aaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaa 280  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||  |||| ||||  ||| |||||||| |||| | |||| | ||||||||||||    
T  16168261 aaacaacaatatcatccgatcatttgaaaatgttaacactgcatcaagagagtgaagaacactc-tttattaaggattatgatttcacacatacaagaaa 16168359  T
Q  281 cttgttgttttct 293  Q
    ||||| |||||||    
T  16168360 cttgtggttttct 16168372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 3614929 - 3614836
Alignment:
Q  199 atcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttct 293  Q
    |||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||| |||||| |||||| |||||||||||| |||| |||||||    
T  3614929 atcatttgaaaatgctaacaccacatcaaggaagtggagaatgctc-tttattaaggattgtgattttacacatacaagaaatttgtggttttct 3614836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 15552341 - 15552438
Alignment:
Q  150 caaagtcatgtatacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttt 247  Q
    |||||||| |||||||||||  |  ||||||||| ||||||||||| | ||| |||||||||| ||  ||  ||||||||||||||||||||||||||    
T  15552341 caaagtcaagtatacaatttgtaccttagagaaagaacaatatcattcaatcgtttgaaaatgctaacaccacatcaaggaagtggagaatgctcttt 15552438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 283
Target Start/End: Original strand, 29547227 - 29547358
Alignment:
Q  150 caaagtcatgtatacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctctttta 249  Q
    |||||||| | ||||||||| | | ||||||||| |||||||||| || ||  |||||||||| ||  ||  |||||||||||||||||||||||  |||    
T  29547227 caaagtcaagcatacaatttta-tcttagagaaagaacaatatcacccaattgtttgaaaatgctaacaccacatcaaggaagtggagaatgctc-ctta 29547324  T
Q  250 ttaaagattgtaattttaaacatacaagaaactt 283  Q
    ||||| ||| | |||||| |||||||||||||||    
T  29547325 ttaaaaattatgattttatacatacaagaaactt 29547358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 11659549 - 11659608
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||    
T  11659549 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcctagttcaaacgagg 11659608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 18535758 - 18535699
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||| ||||||| |||||||||||||||| ||||    
T  18535758 caagaaaatgataaacaacttgaattggtcttgaagtaccatatcttagttcaaacgagg 18535699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 146057 - 145991
Alignment:
Q  150 caaagtcatgtatacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttag 216  Q
    |||||||| | |||||||||  || ||| ||||||| || |||||||||||||||||||||||||||    
T  146057 caaagtcaagcatacaatttgtatcttaaagaaacagcagtatcatccgatcatttgaaaatgttag 145991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 37357504 - 37357458
Alignment:
Q  22 aacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  37357504 aacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 37357458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 17721376 - 17721446
Alignment:
Q  222 catcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttct 293  Q
    |||||||||||||||||||| || |||||||| |||| | ||| || ||||||||||||||||  |||||||    
T  17721376 catcaaggaagtggagaatgttc-tttattaaggattatgattatacacatacaagaaacttgcagttttct 17721446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 11442326 - 11442289
Alignment:
Q  179 agaaacaacaatatcatccgatcatttgaaaatgttag 216  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  11442326 agaaacaacagtatcatccgatcatttaaaaatgttag 11442289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 346349 - 346218
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || ||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| |||| |    
T  346349 atacaatttgtatcttagagaaacaacgatatcatccgatcatttgaaaatgttagcactacgtcaaggaagtggagaatgctc-tttattaaggattat 346251  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
     |||| | ||||||||||||||||| |||||||    
T  346250 gatttcacacatacaagaaacttgtggttttct 346218  T

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Target: scaffold0461 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 13268 - 13137
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgt 260  Q
    |||||||||  || |||||||||||||||||||||| ||||||||||||||||||| ||| | |||| |||||||||||||||| |||||||| |||| |    
T  13268 atacaatttgtatcttagagaaacaacaatatcatctgatcatttgaaaatgttagcactacgtcaatgaagtggagaatgctc-tttattaaggattat 13170  T
Q  261 aattttaaacatacaagaaacttgttgttttct 293  Q
      ||| | ||||||||||||||||| |||||||    
T  13169 ggtttcacacatacaagaaacttgtggttttct 13137  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 32722175 - 32722445
Alignment:
Q  16 atgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagggcactgtcgtattttcctaattataattatcatggtattttattttt 115  Q
    |||||||||||||| ||||| | |||||  || |||||||||| |||||||   ||||    | |||| |||||||||  ||||||| ||||||||||||    
T  32722175 atgatgaacaacttgaattgattctgaatgatgatatcttagtccaaatga---cactaatttgtttttctaattatatatatcatgatattttattttt 32722271  T
Q  116 gtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgtta 215  Q
    ||||||||| ||||   ||||  |  |||||| | ||||||| | |||||||||  || |||||||||||| ||||||  |||||||||||||||| |||    
T  32722272 gtcaatattgttaa---acatgga--tattggaataaagtcaagcatacaatttgtattttagagaaacaaaaatatcgcccgatcatttgaaaatatta 32722366  T
Q  216 ggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    | ||| |||||| |||||| | |||| || |||||||| ||||  || |||| ||||||||||||||||| |||||||||    
T  32722367 gcactacatcaaagaagtgtaaaatgttc-tttattaaggattacaaatttacacatacaagaaacttgtggttttctta 32722445  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 17909240 - 17909353
Alignment:
Q  179 agaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaaga 278  Q
    ||||||||||||||||||| |||||||||||||||||| ||| |||||||||| | |||||||||| |||||||| |||| | |||| | | |||| |||    
T  17909240 agaaacaacaatatcatcctatcatttgaaaatgttagcactacatcaaggaaatagagaatgctc-tttattaaggattatgatttcacatatacgaga 17909338  T
Q  279 aacttgttgttttct 293  Q
    || |||| |||||||    
T  17909339 aagttgtggttttct 17909353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 41048389 - 41048471
Alignment:
Q  210 atgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttct 293  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||| |||| | |||| | ||||||||||||||||| |||||||    
T  41048389 atgttagcactacatcaaggaagtggagaatgctc-tttattaaggattatgatttcacacatacaagaaacttgtggttttct 41048471  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 28349078 - 28348944
Alignment:
Q  77 gtattttcctaattataattatcatggtattttatttttgtcaatattattaataaacataaagttattggtacaaagtcatgtatacaatttaaatatt 176  Q
    ||||||| || ||||||  |||||||||||||||| ||||||||| ||| ||| | |||||    |||||   |||||||| | |||||||||  || ||    
T  28349078 gtattttgcttattatatatatcatggtattttatgtttgtcaatgttagtaa-atacata----tattgcagcaaagtcaagcatacaatttgtatctt 28348984  T
Q  177 agagaaacaacaatatcatccgatcatttgaaaatgttag 216  Q
    | |||||||||| |||||||||||||||||||||||||||    
T  28348983 aaagaaacaacagtatcatccgatcatttgaaaatgttag 28348944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 10738475 - 10738583
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    ||||||||| ||||||||||| | ||| || ||||||| ||  ||  |||||||||||||||||||| || ||| ||||||||| | |||||| ||||||    
T  10738475 ttagagaaagaacaatatcattcaatcgttcgaaaatgctaacaccacatcaaggaagtggagaatgttc-tttcttaaagattatgattttatacatac 10738573  T
Q  275 aagaaacttg 284  Q
    ||||||||||    
T  10738574 aagaaacttg 10738583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 34192054 - 34191946
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    |||||||||||||||||||||||||||||||  ||||||||  | | ||||| ||| |||||  ||||||||||||||| ||||   | |||| ||||||    
T  34192054 ttagagaaacaacaatatcatccgatcatttagaaatgttaacattacatcatggatgtggaagatgctcttttattaaggattacgagtttacacatac 34191955  T
Q  275 aagaaactt 283  Q
    || ||||||    
T  34191954 aaaaaactt 34191946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 23429045 - 23429100
Alignment:
Q  161 atacaatttaaatattagagaaacaacaatatcatccgatcatttgaaaatgttag 216  Q
    |||||||||  || ||| ||||||||||||||||||||||||||||||||||||||    
T  23429045 atacaatttgtatcttaaagaaacaacaatatcatccgatcatttgaaaatgttag 23429100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 30715004 - 30714945
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  30715004 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 30714945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 30722782 - 30722666
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagggcactgtcgtattttcctaattataattatcatggtattt 108  Q
    |||||| | ||| |||||||| ||||||||   |||||||||||||||||||||| |||  || |   |||||||  ||||||||  |||  ||||||||    
T  30722782 caagaaaacgataaacaacttgaattggtctcaaagtatcatatcttagttcaaacgagaacattaatgtattttgttaattatatgtattgtggtattt 30722683  T
Q  109 tatttttgtcaatatta 125  Q
    | |||||||||||||||    
T  30722682 tgtttttgtcaatatta 30722666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 30722605 - 30722543
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgt 285  Q
    |||||| |||||||||||||||||||||||| |||  | |||||| | |||||||||| ||||    
T  30722605 atcaagaaagtggagaatgctcttttattaaggataatgattttacaaatacaagaaaattgt 30722543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 30714828 - 30714756
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| |||| |||||||||| || |||  | |||||| |  |||||||||||||||| |||||||    
T  30714828 atcaaggaagtgaagaacgctcttttatcaaggatgatgattttacaagtacaagaaacttgttgatttctta 30714756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 17270852 - 17270739
Alignment:
Q  179 agaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaaga 278  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||| |||||||| |||| | |||| | | |||| |||    
T  17270852 agaaacaacaatatcatccgatcaattgaaaatgttagcactacatcaaggaagtagagaatgctc-tttattaaggattatgatttcacatatacgaga 17270754  T
Q  279 aacttgttgttttct 293  Q
    ||||||| |||||||    
T  17270753 aacttgtggttttct 17270739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 19441792 - 19441684
Alignment:
Q  175 ttagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatac 274  Q
    ||||||||| |||||||||| || ||  |||||||||||||  ||  ||||||| ||||||| |||||| ||| |||||||||| | |||||| ||||||    
T  19441792 ttagagaaagaacaatatcacccaattgtttgaaaatgttaacaccacatcaagaaagtggacaatgctattt-attaaagattatgattttatacatac 19441694  T
Q  275 aagaaacttg 284  Q
    ||||||||||    
T  19441693 aagaaacttg 19441684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 25395262 - 25395323
Alignment:
Q  222 catcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttg 284  Q
    ||||||||||||||||||| |||||| |||||||||| | |||||| ||||||||||||||||    
T  25395262 catcaaggaagtggagaatactcttt-attaaagattatgattttatacatacaagaaacttg 25395323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 6932534 - 6932641
Alignment:
Q  176 tagagaaacaacaatatcatccgatcatttgaaaatgttaggactgcatcaaggaagtggagaatgctcttttattaaagattgtaattttaaacataca 275  Q
    |||||||| |||||||||| || |||  ||||||||||||  |   |||||||||||||||||||| || |||||||| |||  | ||| || |||||||    
T  6932534 tagagaaagaacaatatcacccaatcgattgaaaatgttaacatcacatcaaggaagtggagaatgttc-tttattaaggatcatgattatacacataca 6932632  T
Q  276 agaaacttg 284  Q
    |||||||||    
T  6932633 agaaacttg 6932641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 111246 - 111305
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| |||||||||||||||| |||||||||||||||| ||||    
T  111246 caagaaaatgataaacaacttgaattggtcctgaagtaccatatcttagttcaaacgagg 111305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 111422 - 111494
Alignment:
Q  223 atcaaggaagtggagaatgctcttttattaaagattgtaattttaaacatacaagaaacttgttgttttctta 295  Q
    |||||||||||| |||| |||||||||| || |||  | |||||| |  |||||||||||||||| |||||||    
T  111422 atcaaggaagtgaagaacgctcttttatcaaggatgatgattttacaagtacaagaaacttgttgatttctta 111494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 13397 - 13456
Alignment:
Q  9 caagaatatgatgaacaacttaaattggtcctgaagtatcatatcttagttcaaatgagg 68  Q
    |||||| ||||| |||||||| | |||||||| ||||| |||||||||||||||| ||||    
T  13397 caagaaaatgataaacaacttgatttggtcctaaagtaccatatcttagttcaaacgagg 13456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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