View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13463_high_5 (Length: 307)

Name: NF13463_high_5
Description: NF13463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13463_high_5
NF13463_high_5
[»] chr1 (19 HSPs)
chr1 (13-291)||(8363945-8364222)
chr1 (19-90)||(43318930-43319002)
chr1 (22-90)||(42546104-42546173)
chr1 (13-90)||(800536-800614)
chr1 (13-90)||(9445830-9445908)
chr1 (22-90)||(41584618-41584687)
chr1 (22-90)||(52744796-52744865)
chr1 (19-90)||(43319141-43319213)
chr1 (29-90)||(17000515-17000577)
chr1 (45-90)||(15069818-15069863)
chr1 (22-90)||(32817564-32817633)
chr1 (22-90)||(45046803-45046872)
chr1 (60-90)||(24472819-24472849)
chr1 (22-90)||(7011347-7011416)
chr1 (45-90)||(9446072-9446117)
chr1 (45-90)||(40907911-40907956)
chr1 (22-90)||(44573050-44573119)
chr1 (29-87)||(34006400-34006460)
chr1 (29-88)||(40650635-40650695)
[»] chr4 (22 HSPs)
chr4 (13-291)||(27181465-27181741)
chr4 (22-90)||(2505984-2506053)
chr4 (3-90)||(25140440-25140528)
chr4 (22-90)||(19835665-19835734)
chr4 (22-90)||(40703809-40703878)
chr4 (19-90)||(25140872-25140944)
chr4 (21-90)||(41323044-41323114)
chr4 (22-90)||(25491348-25491417)
chr4 (22-90)||(31582375-31582444)
chr4 (33-86)||(47784138-47784191)
chr4 (22-90)||(47873955-47874024)
chr4 (22-90)||(48319017-48319086)
chr4 (22-90)||(53893978-53894047)
chr4 (19-90)||(25140665-25140737)
chr4 (22-90)||(8106538-8106608)
chr4 (60-90)||(25752436-25752466)
chr4 (22-90)||(3703202-3703271)
chr4 (30-90)||(7931802-7931863)
chr4 (22-90)||(17933090-17933159)
chr4 (61-90)||(25538972-25539001)
chr4 (61-90)||(55052612-55052641)
chr4 (62-90)||(52089330-52089358)
[»] chr8 (22 HSPs)
chr8 (3-90)||(33472415-33472503)
chr8 (21-90)||(33472208-33472278)
chr8 (22-90)||(27927894-27927963)
chr8 (19-90)||(10833465-10833537)
chr8 (3-90)||(31234452-31234540)
chr8 (22-90)||(8885406-8885475)
chr8 (22-90)||(9073641-9073710)
chr8 (19-90)||(24627919-24627991)
chr8 (29-90)||(9845323-9845385)
chr8 (21-90)||(14164009-14164079)
chr8 (22-87)||(34853468-34853534)
chr8 (22-90)||(3094822-3094891)
chr8 (22-90)||(36165791-36165860)
chr8 (22-90)||(40328034-40328103)
chr8 (22-90)||(42280844-42280913)
chr8 (29-88)||(11698276-11698336)
chr8 (19-90)||(41530812-41530884)
chr8 (22-87)||(17119832-17119898)
chr8 (45-87)||(24627714-24627756)
chr8 (22-90)||(28916912-28916981)
chr8 (45-90)||(40392673-40392718)
chr8 (45-90)||(40994929-40994974)
[»] chr5 (26 HSPs)
chr5 (13-90)||(8738929-8739007)
chr5 (13-89)||(27493893-27493970)
chr5 (13-90)||(8973553-8973631)
chr5 (22-90)||(20891712-20891781)
chr5 (19-90)||(16429171-16429243)
chr5 (3-90)||(28445143-28445231)
chr5 (3-90)||(34530314-34530402)
chr5 (19-90)||(38641033-38641105)
chr5 (21-90)||(6156830-6156900)
chr5 (21-90)||(8739140-8739210)
chr5 (3-90)||(16429381-16429469)
chr5 (22-90)||(15799324-15799393)
chr5 (45-90)||(28445382-28445427)
chr5 (22-90)||(31221292-31221361)
chr5 (22-90)||(31929078-31929146)
chr5 (22-90)||(38871770-38871839)
chr5 (29-90)||(32841930-32841993)
chr5 (29-87)||(33487712-33487771)
chr5 (29-90)||(27158183-27158245)
chr5 (21-90)||(27494105-27494175)
chr5 (29-90)||(29862711-29862773)
chr5 (22-87)||(37183734-37183800)
chr5 (61-90)||(4064713-4064742)
chr5 (45-90)||(4650194-4650239)
chr5 (61-90)||(25747124-25747153)
chr5 (22-90)||(39524875-39524944)
[»] chr2 (18 HSPs)
chr2 (13-90)||(17766768-17766846)
chr2 (29-90)||(39447299-39447361)
chr2 (45-90)||(5507556-5507601)
chr2 (22-87)||(16750377-16750442)
chr2 (22-90)||(36875122-36875191)
chr2 (19-90)||(9847157-9847229)
chr2 (33-90)||(17474758-17474816)
chr2 (22-87)||(32187817-32187883)
chr2 (21-90)||(34519484-34519554)
chr2 (45-90)||(25715697-25715742)
chr2 (22-90)||(41203134-41203203)
chr2 (22-90)||(44465675-44465744)
chr2 (22-90)||(45153739-45153808)
chr2 (19-90)||(9847365-9847437)
chr2 (29-84)||(19109970-19110026)
chr2 (45-90)||(15995085-15995130)
chr2 (22-90)||(33452391-33452460)
chr2 (22-90)||(41510377-41510445)
[»] chr3 (19 HSPs)
chr3 (29-90)||(35142211-35142273)
chr3 (3-90)||(33842008-33842096)
chr3 (22-90)||(8735530-8735599)
chr3 (22-90)||(9087771-9087840)
chr3 (22-90)||(38977701-38977770)
chr3 (45-90)||(47769399-47769444)
chr3 (22-90)||(3352019-3352088)
chr3 (22-90)||(33438658-33438727)
chr3 (22-90)||(47123163-47123232)
chr3 (48-90)||(27143396-27143438)
chr3 (60-90)||(29035851-29035881)
chr3 (21-90)||(35345861-35345931)
chr3 (22-87)||(46624860-46624926)
chr3 (29-90)||(51540574-51540636)
chr3 (22-90)||(501094-501163)
chr3 (22-90)||(34821296-34821365)
chr3 (22-90)||(39149946-39150015)
chr3 (45-90)||(45244527-45244572)
chr3 (22-90)||(47130529-47130598)
[»] chr7 (16 HSPs)
chr7 (22-90)||(5278401-5278470)
chr7 (22-90)||(9151933-9152002)
chr7 (22-90)||(28230421-28230490)
chr7 (22-90)||(36468490-36468559)
chr7 (3-90)||(5730910-5730998)
chr7 (19-90)||(8214451-8214523)
chr7 (20-90)||(8214241-8214312)
chr7 (22-87)||(42865055-42865121)
chr7 (29-90)||(42925601-42925663)
chr7 (19-87)||(16278246-16278315)
chr7 (22-88)||(24690287-24690354)
chr7 (29-90)||(3936245-3936307)
chr7 (33-90)||(48776175-48776233)
chr7 (22-90)||(19225551-19225620)
chr7 (22-90)||(19818517-19818586)
chr7 (22-90)||(37518248-37518317)
[»] chr6 (9 HSPs)
chr6 (22-90)||(1945483-1945552)
chr6 (19-90)||(17501003-17501075)
chr6 (22-90)||(2539588-2539657)
chr6 (21-87)||(5699705-5699772)
chr6 (29-90)||(23406933-23406995)
chr6 (22-90)||(14587513-14587582)
chr6 (29-87)||(21514991-21515050)
chr6 (22-90)||(4508255-4508324)
chr6 (45-90)||(34528577-34528622)
[»] scaffold0182 (1 HSPs)
scaffold0182 (29-90)||(23239-23301)
[»] scaffold0016 (1 HSPs)
scaffold0016 (21-90)||(205758-205828)
[»] scaffold0010 (1 HSPs)
scaffold0010 (22-90)||(140622-140691)
[»] scaffold0006 (2 HSPs)
scaffold0006 (45-90)||(59947-59992)
scaffold0006 (45-90)||(59497-59542)
[»] scaffold0027 (1 HSPs)
scaffold0027 (23-90)||(141917-141985)
[»] scaffold0137 (1 HSPs)
scaffold0137 (61-89)||(9490-9518)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 8364222 - 8363945
Alignment:
Q  13 aaaatgataaaaacacaaggatgagaattaggagattaatattatttttaaaatgactatccatgttacaaacatgttnnnnnnnnnncagacaaaaact 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  8364222 aaaatgataaaaacacaaggatgagagttaggagattaatattatttttaaaatgactatccatgttacaaacatgtttaaaaaaaaaaagacaaaaact 8364123  T
Q  113 ttctaannnnnnnnnnngtacaacaagctttctgaaatattatcattcaagaaattaaatgtgtcgaattttgaatttaagcatttcccttcatttactt 212  Q
    ||||||           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8364122 ttctaatttttttttt-gtacaacaagctttctaaaatattatcattcaagaaattaaatgtgtcgaattttgaatttaagcatttcccttcatttactt 8364024  T
Q  213 taatatgcaaatttactttcaagtctttacatacaaagaactttaaaagatcaagtcttttacaagtccgtgcactttt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8364023 taatatgcaaatttactttcaagtctttacatacaaagaactttaaaagatcaagtcttttataagtccgtgcactttt 8363945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 43318930 - 43319002
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||| | |||||| |||||||||| || |||||||||||||| ||||||||||||||||    
T  43318930 ataaaaacacaaggatgaaagttaggaagattaatattgttcttaaaatgactatcaatgttacaaacatgtt 43319002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 42546173 - 42546104
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||| | |||||||||||| | ||||||||||||||||||||||||||||||    
T  42546173 aaaacagaaggatgagagttagaatgattaatattatctctaaaatgactatccatgttacaaacatgtt 42546104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 800536 - 800614
Alignment:
Q  13 aaaatgataaaaacacaaggatgagaattagg-agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||| |||||||||||||||||||| ||||| | ||||||||| |  | |||||||||||||||| ||||||||||||    
T  800536 aaaatcataaaaacacaaggatgagagttaggaaaattaatattgtcctaaaaatgactatccatgctacaaacatgtt 800614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 9445830 - 9445908
Alignment:
Q  13 aaaatgataaaaacacaaggatgagaattagg-agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||| |||||||||||||||||||| ||||| ||||||| ||| |  |||||||||||||||||| |||||| |||||    
T  9445830 aaaatcataaaaacacaaggatgagagttaggaagattaacattctccttaaaatgactatccatgctacaaagatgtt 9445908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 41584618 - 41584687
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  41584618 aaaacagaaggatgagagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtt 41584687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 52744796 - 52744865
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| ||||||| || ||  ||||||||||||||||||||||||||||||    
T  52744796 aaaacagaaggatgagagttaggaagattaatgttgttcctaaaatgactatccatgttacaaacatgtt 52744865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 43319141 - 43319213
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||| |  || || ||||||||||||  |||||||||||||| ||||||||||||||||    
T  43319141 ataaaaacacaaggatgaaagctatgaagattaatattatccttaaaatgactatcaatgttacaaacatgtt 43319213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 17000577 - 17000515
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  17000577 aaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 17000515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 15069818 - 15069863
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||    
T  15069818 agattaatattgtctctaaaatgactatccatgttacaaacatgtt 15069863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 32817564 - 32817633
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| ||||||| || |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  32817564 aaaacagaaggatgggagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 32817633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 45046803 - 45046872
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   | ||||||||||||||||||||||||||||    
T  45046803 aaaacagaaggatgagagttaggaagattaatattgtccctgaaatgactatccatgttacaaacatgtt 45046872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 24472819 - 24472849
Alignment:
Q  60 ttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||||||||||||||||    
T  24472819 ttaaaatgactatccatgttacaaacatgtt 24472849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 7011416 - 7011347
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| ||| || |||||||||| |   |||||||||||||||||||| |||||||||    
T  7011416 aaaacagaaggatgagagttaagaagattaatattgtccctaaaatgactatccatgttagaaacatgtt 7011347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 9446072 - 9446117
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| |  ||||||||||||||||||||| |||||||||    
T  9446072 agattaatattgtccttaaaatgactatccatgttataaacatgtt 9446117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 40907911 - 40907956
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| | | |||||||| |||||||||||||||||||||    
T  40907911 agattaatattgtctctaaaatgattatccatgttacaaacatgtt 40907956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 44573050 - 44573119
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||| | |||||||||| |   |||||||||||| |||||||||||||||||    
T  44573050 aaaacagaaggatgagagttagaaagattaatattgtccctaaaatgactattcatgttacaaacatgtt 44573119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 34006460 - 34006400
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttt-taaaatgactatccatgttacaaacat 87  Q
    |||||||||| |||||| |||||||||| ||   |||||||||||||||||||||||||||    
T  34006460 aaggatgagagttaggaagattaatattgttccctaaaatgactatccatgttacaaacat 34006400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 40650635 - 40650695
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatg 88  Q
    |||||||||| |||||| |||||||||| |   |||||||| |||||||||||||||||||    
T  40650635 aaggatgagagttaggaagattaatattgtccctaaaatgattatccatgttacaaacatg 40650695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 27181465 - 27181741
Alignment:
Q  13 aaaatgataaaaacacaaggatgagaattaggagattaatattatttttaaaatgactatccatgttacaaacatgttnnnnnnnnnncagacaaaaact 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  27181465 aaaatgataaaaacacaaggatgagagttaggagattaatattatttttaaaatgactatccatgttacaaacatgtttaaaaaaaaa-agacaaaaact 27181563  T
Q  113 ttctaannnnnnnnnnngtacaacaagctttctgaaatattatcattcaagaaattaaatgtgtcgaattttgaatttaagcatttcccttcatttactt 212  Q
    ||||||           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27181564 ttctaatttttttttt-gtacaacaagctttctaaaatattatcattcaagaaattaaatgtgtcgaattttgaatttaagcatttcccttcatttactt 27181662  T
Q  213 taatatgcaaatttactttcaagtctttacatacaaagaactttaaaagatcaagtcttttacaagtccgtgcactttt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27181663 taatatgcaaatttactttcaagtctttacatacaaagaactttaaaagatcaagtcttttataagtccgtgcactttt 27181741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 2505984 - 2506053
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| ||||||||||||||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  2505984 aaaacagaaggatgagaattaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 2506053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 25140440 - 25140528
Alignment:
Q  3 catgtcgaacaaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||| ||||||| | |||||||||| |||||| |||||||||| || ||||||||| ||| |||||||||||||||||    
T  25140440 catgtcaaataaaatcataaaaagataaggatgagagttaggaagattaatattgttcttaaaatgattatacatgttacaaacatgtt 25140528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 19835734 - 19835665
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||||| |||||| |||||||||| ||  ||||||||||||||||||||||||||||||    
T  19835734 aaaacagaaagatgagagttaggaagattaatattgttcctaaaatgactatccatgttacaaacatgtt 19835665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 40703878 - 40703809
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  40703878 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 40703809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 25140872 - 25140944
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||| | |  ||||| |||||||||| |  |||||||||||||||||||||||||||||||    
T  25140872 ataaaaacacaaggatcaaagctaggaagattaatattgtccttaaaatgactatccatgttacaaacatgtt 25140944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 41323044 - 41323114
Alignment:
Q  21 aaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||| |||||||||| |||||| |||||||||| |   |||||||| |||||||||||||||||||||    
T  41323044 aaaaacaaaaggatgagagttaggaagattaatattgtccataaaatgattatccatgttacaaacatgtt 41323114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 25491348 - 25491417
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||||||| |||||||||||||||||    
T  25491348 aaaacagaaggatgagagttaggaagattaatattgtccataaaatgactattcatgttacaaacatgtt 25491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 31582375 - 31582444
Alignment:
Q  22 aaaacacaaggatgagaattaggaga-ttaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| | |||| ||| ||  ||||||||||||||||||||||||||||||    
T  31582375 aaaacagaaggatgagagttaggaaaattaacattgttcataaaatgactatccatgttacaaacatgtt 31582444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 47784191 - 47784138
Alignment:
Q  33 atgagaattaggagattaatattatttttaaaatgactatccatgttacaaaca 86  Q
    |||||| |||||||||||||||| |  ||||||||||||||||| |||||||||    
T  47784191 atgagagttaggagattaatattgtccttaaaatgactatccatattacaaaca 47784138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 47874024 - 47873955
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||||||| || |||||||||| |   |||||||||||||||||||| |||||||||    
T  47874024 aaaacagaaggatgagaattaagaagattaatattgtccctaaaatgactatccatgttataaacatgtt 47873955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 48319017 - 48319086
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||| ||||||||||||||||    
T  48319017 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatcaatgttacaaacatgtt 48319086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 53893978 - 53894047
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||| | |||||||||| |   ||||||||||||||||||||||||||||||    
T  53893978 aaaacagaaggatgagagttagaaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 53894047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 25140665 - 25140737
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||| ||||||||| |  ||||| |||||||||| |  | |||||||||||||||||||||||||||||    
T  25140665 ataaaaacccaaggatgaaagctaggaagattaatattgtcctcaaaatgactatccatgttacaaacatgtt 25140737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 8106608 - 8106538
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttt-taaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||| | |||||| ||| || | ||||||||||||||||||||||||||||||    
T  8106608 aaaacagaaggatgagagttagaaagattaacattgttctctaaaatgactatccatgttacaaacatgtt 8106538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 25752436 - 25752466
Alignment:
Q  60 ttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||||||||||||||||    
T  25752436 ttaaaatgactatccatgttacaaacatgtt 25752466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 3703202 - 3703271
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| ||| || |||||||||| ||  ||||||||||||| |||||||||| |||||    
T  3703202 aaaacagaaggatgagagttatgaagattaatattcttcctaaaatgactatctatgttacaaaaatgtt 3703271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 7931863 - 7931802
Alignment:
Q  30 aggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||| |||||| |||||||||| |   |||||| |||||||||||||||||||||||    
T  7931863 aggatgagagttaggaagattaatattgtccctaaaataactatccatgttacaaacatgtt 7931802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 17933090 - 17933159
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||| | |   |||||||| |||||||||||||||||||||    
T  17933090 aaaacagaaggatgagagttaggaagattaataatgtccctaaaatgattatccatgttacaaacatgtt 17933159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 25538972 - 25539001
Alignment:
Q  61 taaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||||||||||||||||||||||    
T  25538972 taaaatgactatccatgttacaaacatgtt 25539001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 55052612 - 55052641
Alignment:
Q  61 taaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||||||||||||||||||||||    
T  55052612 taaaatgactatccatgttacaaacatgtt 55052641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 90
Target Start/End: Complemental strand, 52089358 - 52089330
Alignment:
Q  62 aaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||||||||||||||    
T  52089358 aaaatgactatccatgttacaaacatgtt 52089330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 33472503 - 33472415
Alignment:
Q  3 catgtcgaacaaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||| |||||||||||||||||| | |||||| |||||||||| |  |||||||||||||||||||||||||||||||    
T  33472503 catgtcaaataaaatcataaaaacacaaggatgatagttaggaagattaatattgtccttaaaatgactatccatgttacaaacatgtt 33472415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 33472278 - 33472208
Alignment:
Q  21 aaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||| |||||| |||||||||| |  |||||||||||||||||||||||||||||||    
T  33472278 aaaaacacaaggatgagagttaggaagattaatattgtccttaaaatgactatccatgttacaaacatgtt 33472208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 27927894 - 27927963
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| | | ||||||||||||||||||||||||||||||    
T  27927894 aaaacagaaggatgagagttaggaagattaatattgtctctaaaatgactatccatgttacaaacatgtt 27927963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 10833465 - 10833537
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||| |||||||| | |||||| |||||||||| |  |||||||||||||||||||||||||||||||    
T  10833465 ataaaaacaaaaggatgaaagttaggaagattaatattgtccttaaaatgactatccatgttacaaacatgtt 10833537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 31234452 - 31234540
Alignment:
Q  3 catgtcgaacaaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||| ||||||||||| ||||| || |||||| |||||||||| |  ||||||||||||||||||||||||| |||||    
T  31234452 catgtcaaataaaatcataaaaacacatggatgggagttaggaagattaatattgtccttaaaatgactatccatgttacaaatatgtt 31234540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 8885406 - 8885475
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  8885406 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 8885475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 9073710 - 9073641
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  9073710 aaaacataaggatgagacttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 9073641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 24627991 - 24627919
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||| |  ||||| |||||||||| |  |||||||||||||| ||||||||||||||||    
T  24627991 ataaaaacacaaggatgaaagctaggaagattaatattgtcattaaaatgactatcaatgttacaaacatgtt 24627919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 9845385 - 9845323
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||| |||| |||||| |||||||||| |  |||||||||||||||||||||||||||||||    
T  9845385 aaggacgagagttaggaagattaatattgtccttaaaatgactatccatgttacaaacatgtt 9845323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 14164009 - 14164079
Alignment:
Q  21 aaaaacacaaggatgagaattaggaga-ttaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||| |||||||||| |||||| | |||||||| |   ||||||||||||||||||||||||||||||    
T  14164009 aaaaacagaaggatgagagttaggaaaattaatattgtccctaaaatgactatccatgttacaaacatgtt 14164079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 34853534 - 34853468
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||||||||||||||||||||||    
T  34853534 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacat 34853468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 3094891 - 3094822
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||| |||||||||||||||||||||    
T  3094891 aaaacagaaggatgagagttaggaagattaatattgtccataaaatgattatccatgttacaaacatgtt 3094822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 36165791 - 36165860
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| ||| || |||||||||| | | |||||| |||||||||||||||||||||||    
T  36165791 aaaacagaaggatgagagttaagaagattaatattgtctctaaaataactatccatgttacaaacatgtt 36165860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 40328103 - 40328034
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||||| |||||| ||||||||||||   ||||||||| ||||||||||||||||||||    
T  40328103 aaaacagaaagatgagagttaggaagattaatattatccataaaatgacaatccatgttacaaacatgtt 40328034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 42280844 - 42280913
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||||||| |||||||||||||||||    
T  42280844 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatgcatgttacaaacatgtt 42280913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 11698276 - 11698336
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatg 88  Q
    |||||||||| |||||| ||||||||||||   |||||||||||||||||||| |||||||    
T  11698276 aaggatgagagttaggaagattaatattatccctaaaatgactatccatgttaaaaacatg 11698336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 41530884 - 41530812
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||||||| || |  ||||| |||||||||| |  || ||||||||||||||||||||||||||||    
T  41530884 ataaaaacacaaggacgaaagctaggaagattaatattgtccttgaaatgactatccatgttacaaacatgtt 41530812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 17119832 - 17119898
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||| |||||||||||||||||    
T  17119832 aaaacagaaggatgagagttaggaagattaatattgtccgtaaaatgacaatccatgttacaaacat 17119898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 24627756 - 24627714
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    ||||||||||| |  ||||||||||||||||||||||||||||    
T  24627756 agattaatattgtccttaaaatgactatccatgttacaaacat 24627714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 28916981 - 28916912
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||| | |||||||||| |   |||||||||||||||||| |||||||||||    
T  28916981 aaaacagaaggatgagagttagaaagattaatattgtccctaaaatgactatccatgtaacaaacatgtt 28916912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 40392718 - 40392673
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| |   ||||||||||||||||||||||||||||||    
T  40392718 agattaatattgtccataaaatgactatccatgttacaaacatgtt 40392673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 40994974 - 40994929
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| |   ||||||||||||||||||||||||||||||    
T  40994974 agattaatattgtccctaaaatgactatccatgttacaaacatgtt 40994929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 8738929 - 8739007
Alignment:
Q  13 aaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||| ||||||| ||| |||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||||    
T  8738929 aaaatcataaaaatacagggatgagagttaggaagattaatattgttcttaaaatgactatccatgttacaaacatgtt 8739007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 27493893 - 27493970
Alignment:
Q  13 aaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgt 89  Q
    ||||| || |||||||||||||||   |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  27493893 aaaatcattaaaacacaaggatgaatgttaggaagattaatattgtttttaaaatgactatccatgttacaaacatgt 27493970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 8973553 - 8973631
Alignment:
Q  13 aaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||| |||||||||||||||||||| |||||| | |||||||| |  ||||||||| |||||||||||||||||||||    
T  8973553 aaaatcataaaaacacaaggatgagagttaggaaggttaatattgtccttaaaatgattatccatgttacaaacatgtt 8973631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 20891781 - 20891712
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||||||    
T  20891781 aaaacagaaggatgagagttaggaagattaatattatccctaaaatgactatccatgttacaaacatgtt 20891712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 16429243 - 16429171
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||| |||||||||||| ||| || ||||| ||||||  |||||||||||||||||||||||||||||||    
T  16429243 ataaaaatacaaggatgagagttatgaagattagtattatcattaaaatgactatccatgttacaaacatgtt 16429171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 28445143 - 28445231
Alignment:
Q  3 catgtcgaacaaaatgataaaaacacaaggatgagaattagg-agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||| |||||||||||||||||||| ||||| ||||||||||| |  |||||| ||| || |||||||||||||||||    
T  28445143 catgtcaaataaaatcataaaaacacaaggatgagagttaggaagattaatattgtccttaaaacgaccatacatgttacaaacatgtt 28445231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 34530402 - 34530314
Alignment:
Q  3 catgtcgaacaaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||| |||||||||||| ||||| | |||||| |||||||||| |  |||||||||||| ||||||||||||||||||    
T  34530402 catgtcaaataaaatcataaaaacacaatgatgaaagttaggaagattaatattgtccttaaaatgactaaccatgttacaaacatgtt 34530314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 38641105 - 38641033
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||| || ||||| |||||||||| |  |||||||||||||| ||||||||||||||||    
T  38641105 ataaaaacacaaggatgaaaactaggaagattaatattgtccttaaaatgactatctatgttacaaacatgtt 38641033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 6156900 - 6156830
Alignment:
Q  21 aaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||| |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  6156900 aaaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 6156830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 8739140 - 8739210
Alignment:
Q  21 aaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||| ||||||||||||| |||||| |||||||||| |  |||||||||||| ||||||||||||||||||    
T  8739140 aaaagcacaaggatgagagttaggaagattaatattgtccttaaaatgactacccatgttacaaacatgtt 8739210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 16429469 - 16429381
Alignment:
Q  3 catgtcgaacaaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||| |||||||||||||||| ||| || ||| |||||||||| |  |||||| |||||| |||||||||||||||||    
T  16429469 catgtcaaataaaatcataaaaacacaaggataagagtttggaagattaatattgtccttaaaacgactattcatgttacaaacatgtt 16429381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 15799393 - 15799324
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| ||||||| ||||||||| || ||||||| |   ||||||||||||||||||||||||||||||    
T  15799393 aaaacagaaggatgcgaattaggaagaataatattgtccataaaatgactatccatgttacaaacatgtt 15799324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 28445382 - 28445427
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||    
T  28445382 agattaatattgtccttaaaatgactatccatgttacaaacatgtt 28445427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 31221292 - 31221361
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  31221292 aaaacagaaagatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 31221361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 31929078 - 31929146
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |  | |||||||||||||||||||||||||||||    
T  31929078 aaaacagaaggatgagagttaggaagattaatattgtcct-aaaatgactatccatgttacaaacatgtt 31929146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 38871839 - 38871770
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| ||||| |||| |   ||||||||||||||||||||||||||||||    
T  38871839 aaaacagaaggatgagagttaggaagattattattgtccctaaaatgactatccatgttacaaacatgtt 38871770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 32841930 - 32841993
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttt-taaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| |||||| |||||||||| ||   ||||||||||||||||||||||||||||||    
T  32841930 aaggatgagagttaggaagattaatattgttccctaaaatgactatccatgttacaaacatgtt 32841993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 33487771 - 33487712
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    |||||||||| |||||| |||||||||| |   |||||||||||||||||||||||||||    
T  33487771 aaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacat 33487712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 27158245 - 27158183
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||| ||||||| | |||||||| |  |||||||||||||||||||| ||||||||||    
T  27158245 aaggatgaggattaggaagcttaatattgtccttaaaatgactatccatgtttcaaacatgtt 27158183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 27494105 - 27494175
Alignment:
Q  21 aaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||||| | |  |||||| |||||||||| |  ||||||||||||||||||||||||| |||||    
T  27494105 aaaaacacaaggacgggggttaggaagattaatattgtccttaaaatgactatccatgttacaaatatgtt 27494175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 29862773 - 29862711
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||| | |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  29862773 aaggatgaaagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 29862711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 37183734 - 37183800
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    |||||| || ||||||| |||||| |||||||||| |   |||||||||||||||||||||||||||    
T  37183734 aaaacaaaaagatgagagttaggaagattaatattgtccataaaatgactatccatgttacaaacat 37183800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 4064713 - 4064742
Alignment:
Q  61 taaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||||||||||||||||||||||    
T  4064713 taaaatgactatccatgttacaaacatgtt 4064742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 4650239 - 4650194
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| || ||| ||||||||||||||| |||||||||||    
T  4650239 agattaatattgttcttacaatgactatccatgtgacaaacatgtt 4650194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 25747153 - 25747124
Alignment:
Q  61 taaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||||||||||||||||||||||    
T  25747153 taaaatgactatccatgttacaaacatgtt 25747124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 39524944 - 39524875
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| ||  |||||||||||| ||| ||||||| |||||    
T  39524944 aaaacagaaggatgagagttaggaagattaatattgttcctaaaatgactatacatattacaaatatgtt 39524875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 17766768 - 17766846
Alignment:
Q  13 aaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||| |||||||||||||||||||| |||||| |||||||||| |  |||||||||||||| ||||||||||||||||    
T  17766768 aaaatcataaaaacacaaggatgagagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgtt 17766846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 39447361 - 39447299
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  39447361 aaggatgagagttaggaagattaatattgtctttaaaatgactatccatgttacaaacatgtt 39447299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 5507601 - 5507556
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  5507601 agattaatattgtttataaaatgactatccatgttacaaacatgtt 5507556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 16750377 - 16750442
Alignment:
Q  22 aaaacacaaggatgagaattaggagattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    |||||| |||||||||| |||| ||||||||||| ||  |||||||||||||||| ||||||||||    
T  16750377 aaaacagaaggatgagagttagaagattaatattgttcctaaaatgactatccatattacaaacat 16750442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 36875191 - 36875122
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| ||||||||||||   ||||||||||||||||||||||||| ||||    
T  36875191 aaaacagaaggatgagagttaggaagattaatattatccctaaaatgactatccatgttacaaacttgtt 36875122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 9847157 - 9847229
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||| | ||| || |||||||||| |  |||||||||||||| ||||||||||||||||    
T  9847157 ataaaaacacaaggatgaaagttatgaagattaatattgtccttaaaatgactatcaatgttacaaacatgtt 9847229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 17474758 - 17474816
Alignment:
Q  33 atgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||| |||||||||| | | ||||||||||||||||||||||||||||||    
T  17474758 atgagagttaggaagattaatattgtctctaaaatgactatccatgttacaaacatgtt 17474816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 32187817 - 32187883
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||||||||||||||||||||||    
T  32187817 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacat 32187883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 34519484 - 34519554
Alignment:
Q  21 aaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||| |||||||| | |||||| |||||||||| |  ||||||||| |||||||||||||||||||||    
T  34519484 aaaaacataaggatgaaagttaggaagattaatattgtccttaaaatgattatccatgttacaaacatgtt 34519554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 25715742 - 25715697
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||    
T  25715742 agattaatattgtctttaaaatgactatcaatgttacaaacatgtt 25715697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 41203134 - 41203203
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||| | |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  41203134 aaaacagaaggatgaaagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtt 41203203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 44465675 - 44465744
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||| ||||||||||||||||||    
T  44465675 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactaaccatgttacaaacatgtt 44465744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 45153739 - 45153808
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| ||| || |||||||||| |   ||||||||||||||||||||||||||||||    
T  45153739 aaaacagaaggatgagagttaagaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 45153808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 9847365 - 9847437
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||| | |||||| |||||||||| |  |||||||||||||| | |||||||| |||||    
T  9847365 ataaaaacacaaggatgaaatttaggaagattaatattgtccttaaaatgactatcgacgttacaaatatgtt 9847437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 19109970 - 19110026
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaa 84  Q
    |||||||||| |||||| ||||||||||||  |||||||||| ||||||||||||||    
T  19109970 aaggatgagagttaggaagattaatattatccttaaaatgacgatccatgttacaaa 19110026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 15995085 - 15995130
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| |   ||||||||||||||||||||||||||||||    
T  15995085 agattaatattgtccataaaatgactatccatgttacaaacatgtt 15995130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 33452391 - 33452460
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| ||| |||||| |||||| |||||||||| |   |||||||| |||||||||||||||||||||    
T  33452391 aaaacaaaagaatgagagttaggaagattaatattgtccctaaaatgattatccatgttacaaacatgtt 33452460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 41510377 - 41510445
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||| ||||||||||||||||    
T  41510377 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatc-atgttacaaacatgtt 41510445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 35142273 - 35142211
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  35142273 aaggatgagagttaggaagattaatattgtctttaaaatgactatccatgttacaaacatgtt 35142211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 33842008 - 33842096
Alignment:
Q  3 catgtcgaacaaaatgataaaaacacaaggatgagaattaggag-attaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||| |||||||||||||||||||| ||| ||  ||||||||| |  ||||||||||||||||| |||||||||||||    
T  33842008 catgtcaaataaaatcataaaaacacaaggatgagagttacgaacattaatattgtccttaaaatgactatccatattacaaacatgtt 33842096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 8735599 - 8735530
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||||||| | |||||| |||||||||| |  |||||||||||||| ||||||||||||||||    
T  8735599 aaaacacaaggatgaaagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgtt 8735530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 9087840 - 9087771
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||||||| | |||||| |||||||||| |  |||||||||||||| ||||||||||||||||    
T  9087840 aaaacacaaggatgaaagttaggaagattaatattgtccttaaaatgactatcaatgttacaaacatgtt 9087771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 38977701 - 38977770
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  38977701 aaaacagaaggatgagagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtt 38977770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 47769444 - 47769399
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||    
T  47769444 agattaatatgattcttaaaatgactatccatgttacaaacatgtt 47769399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 3352019 - 3352088
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| ||| |||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  3352019 aaaacagaagaatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 3352088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 33438727 - 33438658
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||||||||||| |||||||||||||    
T  33438727 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatattacaaacatgtt 33438658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 47123232 - 47123163
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||| |||||||||||||||||||||    
T  47123232 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgattatccatgttacaaacatgtt 47123163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 27143396 - 27143438
Alignment:
Q  48 ttaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||  ||||||| |||||||||||||||||||||||    
T  27143396 ttaatattatccttaaaataactatccatgttacaaacatgtt 27143438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 90
Target Start/End: Complemental strand, 29035881 - 29035851
Alignment:
Q  60 ttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||||||||||||||||    
T  29035881 ttaaaatgactatccatgttacaaacatgtt 29035851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 35345861 - 35345931
Alignment:
Q  21 aaaaacacaaggatgagaattaggag-attaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||| |||||||||| |||| |  ||||||||| |   ||||||||||||||||||||||||||||||    
T  35345861 aaaaacaaaaggatgagagttagaaatattaatattgtccataaaatgactatccatgttacaaacatgtt 35345931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 46624926 - 46624860
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||||||| ||||||||||||||    
T  46624926 aaaacagaaggatgagagttaggaagattaatattttccataaaatgactatacatgttacaaacat 46624860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 51540574 - 51540636
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| |||||| |||||||||| |   ||||||||||||||| ||||||||||||||    
T  51540574 aaggatgagagttaggaagattaatattgtccctaaaatgactatccaagttacaaacatgtt 51540636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 501094 - 501163
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| ||||||||||  ||||| |||||||||| |   |||||||||||||||| |||||||||||||    
T  501094 aaaacagaaggatgagagctaggaagattaatattgtccataaaatgactatccattttacaaacatgtt 501163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 34821296 - 34821365
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||| | |||||| |||||||||| |   ||||||||||||| ||||||||||||||||    
T  34821296 aaaacagaaggatgaaatttaggaagattaatattgtccataaaatgactatctatgttacaaacatgtt 34821365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 39150015 - 39149946
Alignment:
Q  22 aaaacacaaggatgagaattaggaga-ttaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| | |||||||| | | ||||||||||| | ||||||||||||||||    
T  39150015 aaaacagaaggatgagagttaggaaaattaatattgtctctaaaatgactaccaatgttacaaacatgtt 39149946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 45244572 - 45244527
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| |  |||||||||||| ||||||||||||||||||    
T  45244572 agattaatattgtccttaaaatgactaaccatgttacaaacatgtt 45244527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 47130598 - 47130529
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||| | |||||||||||||||||||    
T  47130598 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgattgtccatgttacaaacatgtt 47130529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 5278470 - 5278401
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||| ||| |||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  5278470 aaaacagaaggataagagttaggaagattaatattatccttaaaatgactatccatgttacaaacatgtt 5278401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 9152002 - 9151933
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  9152002 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 9151933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 28230421 - 28230490
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  28230421 aaaacagaaggatgagagttaggaagattaatattgtccataaaatgactatccatgttacaaacatgtt 28230490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 36468490 - 36468559
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| ||| || |||||||||| ||  ||||||||||||||||||||||||||||||    
T  36468490 aaaacagaaggatgagagttatgaagattaatattgttcctaaaatgactatccatgttacaaacatgtt 36468559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 5730910 - 5730998
Alignment:
Q  3 catgtcgaacaaaatgataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| || ||||| |||||||||||||  ||||| |||| | |||||||||| | |||||||||||||| |||| ||||||||||||    
T  5730910 catgtcaaataaaatcataaaaacacaagattgagagttagaaagattaatattgtatttaaaatgactattcatgctacaaacatgtt 5730998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 8214451 - 8214523
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| ||||||||| |||||| |||||||||| |  |||||||||| ||| ||||||||||||||||    
T  8214451 ataaaaacacgaggatgagagttaggaagattaatattgtccttaaaatgacaatcgatgttacaaacatgtt 8214523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 8214241 - 8214312
Alignment:
Q  20 taaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| ||||||| |||||| |||||||||| |  ||| |||||||||||||||| ||||||||||    
T  8214241 taaaaacacaatgatgagagttaggaagattaatattgtccttagaatgactatccatgttgcaaacatgtt 8214312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 42865055 - 42865121
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||||||||||||||||||||||||    
T  42865055 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacat 42865121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 42925601 - 42925663
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  42925601 aaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 42925663  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 16278315 - 16278246
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    ||||||||||||||||| || | | || |||||||||| |  ||||||||||||||||||||||||||||    
T  16278315 ataaaaacacaaggatgggagtaaagatgattaatattgtccttaaaatgactatccatgttacaaacat 16278246  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 24690287 - 24690354
Alignment:
Q  22 aaaacacaaggatgagaattagg-agattaatattatttttaaaatgactatccatgttacaaacatg 88  Q
    |||||| |||||||||| ||||| ||||||||||| |   ||||||||| ||||||||||||||||||    
T  24690287 aaaacaaaaggatgagagttaggtagattaatattgtccataaaatgacgatccatgttacaaacatg 24690354  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 3936307 - 3936245
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| |||||| |||||||||| |   |||||||| |||||||||||||||||||||    
T  3936307 aaggatgagagttaggaagattaatattgtccctaaaatgattatccatgttacaaacatgtt 3936245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 48776175 - 48776233
Alignment:
Q  33 atgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||| ||||||||||||  ||||||| ||||||||||||| |||||||||    
T  48776175 atgagagttaggaagattaatattatccttaaaatcactatccatgttataaacatgtt 48776233  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 19225551 - 19225620
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||| |||| ||   |||||||| |||||||||||||||||||||    
T  19225551 aaaacagaaggatgagagttaggaagatttatatcatccataaaatgaatatccatgttacaaacatgtt 19225620  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 19818586 - 19818517
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   |||||| |||||||||||||||| ||||||    
T  19818586 aaaacagaaggatgagagttaggaagattaatattgtccctaaaataactatccatgttacaagcatgtt 19818517  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 37518248 - 37518317
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||| | ||  |||||||||||||  |||||||||||||||    
T  37518248 aaaacagaaggatgagagttaggaagattaatagtgttcctaaaatgactatctctgttacaaacatgtt 37518317  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 1945483 - 1945552
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||||||    
T  1945483 aaaacagaaggatgagagttaggaagattaatattatccctaaaatgactatccatgttacaaacatgtt 1945552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 17501075 - 17501003
Alignment:
Q  19 ataaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||||| |||||||| |||||||| | |  ||||||||||||| |||||||||||||||||    
T  17501075 ataaaaacacaaggatgaaaattaggaagattaataatgtccttaaaatgactattcatgttacaaacatgtt 17501003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 2539657 - 2539588
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  2539657 aaaacagaaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 2539588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 5699772 - 5699705
Alignment:
Q  21 aaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    ||||||| |||||||||| ||| || |||||||||| |  ||||||||||||||||||||||||||||    
T  5699772 aaaaacagaaggatgagagttatgaagattaatattgtccttaaaatgactatccatgttacaaacat 5699705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 23406995 - 23406933
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  23406995 aaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 23406933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 14587513 - 14587582
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||| ||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  14587513 aaaacataaggattagagttaggaagattaatattgtccgtaaaatgactatccatgttacaaacatgtt 14587582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 21514991 - 21515050
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacat 87  Q
    |||||||||| |||||| |||||||||| |   |||||||||||||||||||||||||||    
T  21514991 aaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacat 21515050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 4508255 - 4508324
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||| | |||||| |||||||||| |   |||||||||||||||| |||||||||||||    
T  4508255 aaaacagaaggatgaaagttaggaagattaatattgtccctaaaatgactatccatattacaaacatgtt 4508324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 34528622 - 34528577
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||  || |||||| |||||||||||||||||||||    
T  34528622 agattaatattatccttgaaatgaatatccatgttacaaacatgtt 34528577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 23301 - 23239
Alignment:
Q  29 aaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||| |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  23301 aaggatgagagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 23239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 205758 - 205828
Alignment:
Q  21 aaaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||||||||||||| |  ||||| ||||||||||||  |||||||||||| | ||||||||||||||||    
T  205758 aaaaacacaaggatgaaagctaggaagattaatattatccttaaaatgactaccaatgttacaaacatgtt 205828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 140691 - 140622
Alignment:
Q  22 aaaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    |||||| |||||||||| |||||| |||||||||| |   ||||||||||||| ||||||||||||||||    
T  140691 aaaacaaaaggatgagagttaggaagattaatattgtccctaaaatgactatcaatgttacaaacatgtt 140622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 59947 - 59992
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| | ||||||||||||||| ||||||||||||||||    
T  59947 agattaatattgtctttaaaatgactatctatgttacaaacatgtt 59992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 59542 - 59497
Alignment:
Q  45 agattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||||||||| |  ||||||||||||||||||| |||||||||||    
T  59542 agattaatattgtccttaaaatgactatccatgtcacaaacatgtt 59497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 141917 - 141985
Alignment:
Q  23 aaacacaaggatgagaattagga-gattaatattatttttaaaatgactatccatgttacaaacatgtt 90  Q
    ||||| ||||||| || |||||| |||||||||| |   ||||||||||||||||||||||||||||||    
T  141917 aaacagaaggatgggagttaggaagattaatattgtccctaaaatgactatccatgttacaaacatgtt 141985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 9490 - 9518
Alignment:
Q  61 taaaatgactatccatgttacaaacatgt 89  Q
    |||||||||||||||||||||||||||||    
T  9490 taaaatgactatccatgttacaaacatgt 9518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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