View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13463_low_1 (Length: 846)
Name: NF13463_low_1
Description: NF13463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13463_low_1 |
 | |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 10 - 829
Target Start/End: Complemental strand, 22952 - 22133
Alignment:
| Q |
10 |
cgaagaatatcacccatcatcttagcaatgtttacagcctccataaagttgcctgattcctcttctaattcaagaagctcatcaagtaagcttaatgatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22952 |
cgaagaatatcacccatcatcttagcaatgtttacagcctccataaagttgcctgattcctcttctaattcaagaagctcatcaagtaagcttaatgatt |
22853 |
T |
|
| Q |
110 |
gtaagaactcacgcttcaaatccatcgaatgaaaagctctaacaaatttcatcatagatttgatatctttgttgtcaaaatattttcgggcacatttttg |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
22852 |
gtaagaactcacgcctcaaatccatcgaatgaaaagctctaacaaatttcatcatagatttgatatctttgttgccaaaatattttcgggcacatttttg |
22753 |
T |
|
| Q |
210 |
cagaaatttctgttcaattgcgtacagatcatgactatcagcccaaccaggatccacactttcattttgtttccggcgctgaatgtaatgtaagccaatg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22752 |
cagaaatttctgttcaattgcgtacagatcatgactattagcccaaccaggatccacactttcattttgtttccggcgctgaatgtaatgtaagccaatg |
22653 |
T |
|
| Q |
310 |
tcaaacaatccaccttttgcacaaacattcaaacaatctaagaagaaacttcctctagcatacacttgagctgccattttgtgacaaccagctaaataaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22652 |
tcaaacaatccaccttttgcacaaacattcaaacaatctaagaagaaacttcctctagcatacacttgagctgccattttgtgacaaccagctaaataaa |
22553 |
T |
|
| Q |
410 |
agcaatcccctgcccttttcaaatcaggctcacatttttccaagtaaatcttccctgttagcaaaaataagattaattttgaagagtaaaagttcataat |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
22552 |
agcaatcccctgcccttttcaaatcaggctcacatttttccaagtaaatcttccctgttagcaaaaataagatgaattttgaagagtaaaagttcataat |
22453 |
T |
|
| Q |
510 |
acaaaaattaatctaagcatgagattcaattaaaatttgtgtaagctttggcaatgacattaggggactaaaaaagatgattaccctataatatttgctt |
609 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22452 |
acaaaaaataatctaagcatgagattcaattaaaatttgtgtaagctttggcaatgacattaggggactaaaaaagatgattaccctataatatttgctt |
22353 |
T |
|
| Q |
610 |
ctacaacaaaataagtcaaatccataactcaaatcaaacggaatcatcagcaacaaaactattactgacactcacataaccagaagtcatttaaatagta |
709 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22352 |
ctacaacaaaataagtcaaatccataactcaaatcaaacggaatcatcaacaacaaaactattactgacactcacataaccagaagtcatttaaatagta |
22253 |
T |
|
| Q |
710 |
tcggtaactacaatagaagttaggtatagatgaaatttgtaaccacaacacatgctttgtctggaggaaatatgcaagtcacaaaatgttcagattgaat |
809 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22252 |
tcggtaactacaatagaagttaggtatagatgaaagttgtaaccacaacacatgctttgtctggaggaaatatgcaagtcacaaaatgtgcagattgaat |
22153 |
T |
|
| Q |
810 |
aaaagaaactatctctcagt |
829 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
22152 |
aaaagaaactatctctcagt |
22133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 49 - 666
Target Start/End: Original strand, 34602549 - 34603165
Alignment:
| Q |
49 |
tccataaagttgcctgattcctcttctaattcaagaagctcatcaagtaagcttaatgattgtaagaactcacgcttcaaatccatcgaatgaaaagctc |
148 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||||| |||||||||| |
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| T |
34602549 |
tccataaagttgcctgattcctcttccaattcaagaagctcatcaagtaagcttaatgatagtaagaacctgcgctttaaattcatcgagtgaaaagctc |
34602648 |
T |
|
| Q |
149 |
taacaaatttcatcatagatttgatatctttgttgtcaaaatattttcgggcacatttttgcagaaatttctgttcaattgcgtacagatcatgactatc |
248 |
Q |
| |
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||||||||||||||| |||||||||||||| || |||||||| || ||||||| |||| || |||||||||||||||||||| ||||||||| |||| |
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|
| T |
34602649 |
gaacaaatttcatcatggatttgatatctttcttctcaaaataattgtgggcacaattttccataaatttctgttcaattgcgttcagatcatggctatt |
34602748 |
T |
|
| Q |
249 |
agcccaaccaggatccacactttcattttgtttccggcgctgaatgtaatgtaagccaatgtcaaacaatccaccttttgcacaaacattcaaacaatct |
348 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34602749 |
agcccaaccagggtcagcactctcattttgtttccagcactcaatgtaatgtaatccaatgtcaaacaatccaccttttgcacaaacattcaaacaatct |
34602848 |
T |
|
| Q |
349 |
aagaagaaacttcctctagcatacacttgagctgccattttgtgacaaccagctaaataaaagcaatcccctgcccttttcaaatcaggc---tcacatt |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
34602849 |
gagaagaaacttcctctagcatacacttgagcagccatttcgtgacaacgtgctaagtaaaagcaatcccttgcccttttcaaatcaggctcttcacatt |
34602948 |
T |
|
| Q |
446 |
tttccaagtaaatcttccctgttagcaaaaataagattaattttgaagagtaaaagttcataatacaaaaattaatctaagcatgagattcaattaaaat |
545 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||| ||| |||||| || |||||||| | | |||||||||| |
|
|
| T |
34602949 |
tttccaagtaaagtttccctgttagcagaaa-acgattaattttgaagagtaaaagttcacaatgcaaaaaatagcctaagcat-aaaatcaattaaaa- |
34603045 |
T |
|
| Q |
546 |
ttgtgtaagctttggcaatgacattaggggactaaaaaagatgattaccctataatatttgcttctacaacaaaataagtcaaatccataactcaaatca |
645 |
Q |
| |
|
| ||||||||| | || |||||| ||| |||||| |||| ||||| || | |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
34603046 |
-tatgtaagcttaagtgatctcattagaggattaaaaatgatgtttaccaaattaaatttgcttctacaacaaaatgagtcaaatgattaactcaaatca |
34603144 |
T |
|
| Q |
646 |
aacggaatcatcagcaacaaa |
666 |
Q |
| |
|
|||||| |||||| ||||||| |
|
|
| T |
34603145 |
aacggattcatcaacaacaaa |
34603165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 744
Target Start/End: Complemental strand, 28398064 - 28397336
Alignment:
| Q |
10 |
cgaagaatatcacccatcatcttagcaatgtttacagc---ctccataaagttgcctgattcctcttctaattcaagaagctcatcaagtaagcttaatg |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
28398064 |
cgaagaatatcacccatcgtcttagcaatgttcacagcagcctccataaagttgcctgattcctcttctaattcaagaagctcatcaggtaagtttaatg |
28397965 |
T |
|
| Q |
107 |
attgtaagaactcacgcttcaaatccatcgaatgaaaagctctaacaaatttcatcatagatttgatatctttgttgtcaaaatattttcgggcacattt |
206 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||||||||||| ||||||||||||||| ||| || ||| || ||||||||||| || ||||||| || |
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|
| T |
28397964 |
attgtaagaacccgcgcttcaaatctatcgaatgaaaagctcgaacaaatttcatcatggatctgtaatcatttttgtcaaaataattgagggcacaatt |
28397865 |
T |
|
| Q |
207 |
ttgcagaaatttctgttcaattgcgtacagatcatgactatcagcccaaccaggatccacactttcattttgtttccggcgctgaatgtaatgtaagcca |
306 |
Q |
| |
|
|| || ||||||||||||||||||||| || ||||| |||| |||||||||||| || | || ||||||||||||| || ||||||||||||| | ||| |
|
|
| T |
28397864 |
ttccataaatttctgttcaattgcgtaaaggtcatggctattagcccaaccagggtcagctctctcattttgtttccagcactgaatgtaatgtgatcca |
28397765 |
T |
|
| Q |
307 |
atgtcaaacaatccaccttttgcacaaacattcaaacaatctaagaagaaacttcctctagcatacacttgagctgccattttgtgacaaccagctaaat |
406 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| | | ||||| |||||| |
|
|
| T |
28397764 |
gtgtcaagcaatccaccttttgcacaaacattcaaacaatctgagaagaaacttcctctagcataaacttgagctgccatgtgataacaacgagctaaga |
28397665 |
T |
|
| Q |
407 |
aaaagcaatcccctgcccttttcaaatcaggc---tcacatttttccaagtaaatcttccctgttagcaaaaataagattaattttgaagagtaaaagtt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
28397664 |
aaaagcaatcccctgcccttttcaaatcaggctcttcacatttttccaggtaaatcttccctgttagcagaaa-acgattaattttgaagagtaaaagtg |
28397566 |
T |
|
| Q |
504 |
cataatacaaaaattaatctaagcatgagattcaattaaaatttgtgtaagctttggcaatgacattaggggactaaaaaagatgattaccctataatat |
603 |
Q |
| |
|
|| ||| |||||| || |||| ||||| |||||||||| ||||||||||| || || |||||| ||| || ||| | || |||| |
|
|
| T |
28397565 |
cacaatgcaaaaaatagcctaaacatgaatatcaattaaaa--tgtgtaagcttaggtgatctcattagagga---------ttgtttatcagattatat |
28397477 |
T |
|
| Q |
604 |
ttgcttctacaacaaaataagtcaaatccataactcaaatcaaacggaatcatcagcaacaaaactattactgacactcacataaccagaagtcatttaa |
703 |
Q |
| |
|
|| ||| || |||||||| |||||||| | |||||||||||||| ||| |||||| ||||||||| |||||| |||||||||||| | |||| | | || |
|
|
| T |
28397476 |
tttcttgtaaaacaaaatgagtcaaatgcctaactcaaatcaaatggattcatcaacaacaaaacaattactaacactcacataatctgaagggaatgaa |
28397377 |
T |
|
| Q |
704 |
atagtatcggtaactacaatagaagttaggtatagatgaaa |
744 |
Q |
| |
|
|||||||| || ||||||| | || |||||||||| |||| |
|
|
| T |
28397376 |
atagtatcagttactacaacaagagctaggtatagaagaaa |
28397336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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