View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13463_low_2 (Length: 666)
Name: NF13463_low_2
Description: NF13463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13463_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 18 - 647
Target Start/End: Complemental strand, 31201987 - 31201358
Alignment:
| Q |
18 |
acaacaataagaagaggaataatgagattcaagatgacatataccatcacttgttaattgtcgctaaaagttatagtataataatgaatcaacagcaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201987 |
acaacaataagaagaggaataatgagattcaagatgacatataccatcacttgttaattgtcgctaaaagttatagtataataatgaatcaacagcaata |
31201888 |
T |
|
| Q |
118 |
ataacaataaatttgtcnnnnnnntaataatcagaatattaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatct |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201887 |
ataacaataaatttgtcaaaaaaataataatcagaatattaagaatgataccctgattgtttggttaccaatggttatggtactgctgaagtctctatct |
31201788 |
T |
|
| Q |
218 |
aatgtactagcagcaattgtgaatacccatggagctacattcacaacacttccattggttggtccttcattacctgcagaggcaactaataatatatttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201787 |
aatgtactagcagcaattgtgaatacccatggagctacattcacaacacttccaccggttggtccttcattacctgcagaggcaactaataatatatttc |
31201688 |
T |
|
| Q |
318 |
tagaaagtgcatggaatgctccaattgaaacctcgtctgtaaaaatatcttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201687 |
tagaaagtgcatggaatgctccaattgaaacctcgtctgtaaaaatatcttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaac |
31201588 |
T |
|
| Q |
418 |
accatcactaatggcttgatcaatagcagctaatacatcggcaccaaagcagtcatcaagatctaacagagaccagcacactttgtaggttgcaacccta |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201587 |
accatcactaatggcttgatcaatagcagctaatacatcggcaccaaagcagtcttcaagatctaacagagaccagcacactttgtaggttgcaacccta |
31201488 |
T |
|
| Q |
518 |
gctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31201487 |
gctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgt |
31201388 |
T |
|
| Q |
618 |
ggcctaaaaagtcgcgtgcggtacgttgcc |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31201387 |
ggcctaaaaagtcgcgtgcggtacgttgcc |
31201358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 92 - 642
Target Start/End: Original strand, 31063256 - 31063805
Alignment:
| Q |
92 |
agtataataatgaatcaacagcaataata--acaataaatttgtcnnnnnnntaataatcagaatattaagaatgataccctgattgttttgttaccaat |
189 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||| |||| || |||||||||||||||||| ||||| ||| ||| || |||||| |
|
|
| T |
31063256 |
agtataataataaattaacagcaataatatcacaataaatatgtcaaaaagaaaaaaatcagaatattaagaat---accctaattatttggtcaccaat |
31063352 |
T |
|
| Q |
190 |
ggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagctacattcacaacacttccattggttggtccttcatta |
289 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||| |||||||||||| ||||| ||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
31063353 |
ggttatggtactgctgaagtctctgtcaattgtactagcagcaactgtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcattt |
31063452 |
T |
|
| Q |
290 |
cctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtctgtaaaaatatcttcgggataaacaagagaatggc |
389 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| ||||||||| ||||| || |||||||||||||| |||||||| ||||| | || | ||| ||| |
|
|
| T |
31063453 |
cccgcagatgcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaacctcgtcggtaaaaatttcttcagaatttgtactagatgggc |
31063552 |
T |
|
| Q |
390 |
cagcaagtgaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggcaccaaagcagtcatcaagatctaacagaga |
489 |
Q |
| |
|
| || |||| || ||||| |||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||| | | |||| ||||| |
|
|
| T |
31063553 |
ctccagcagaaacagatattatgtcaacaccatcatcaattgcttgatcaatagcagataatacatcagcaccaaagcaactagcggcatctgttagaga |
31063652 |
T |
|
| Q |
490 |
ccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttccc |
589 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||| ||||| ||||| |||||| ||||||| |||||||| |
|
|
| T |
31063653 |
ccagcacactttgtaggttgcaactctagctcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaagtttcca |
31063752 |
T |
|
| Q |
590 |
ccagctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgcggtacg |
642 |
Q |
| |
|
|| ||||||||||| |||||||||||||| |||| |||||| ||||| ||||| |
|
|
| T |
31063753 |
ccggctgttgatagtgtatgagtaccgtgacctacaaagtcacgtgctgtacg |
31063805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 155 - 621
Target Start/End: Original strand, 31108405 - 31108871
Alignment:
| Q |
155 |
attaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagcta |
254 |
Q |
| |
|
|||||| || ||||| ||| |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
31108405 |
attaaggataataccgtgagtgttttgttaccaatggtcatgacactgctgaagtctctgtctaatgtactagcagcaacagtgaacacccatggagcaa |
31108504 |
T |
|
| Q |
255 |
cattcacaacacttccattggttggtccttcattacctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtc |
354 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||| || ||||| |||||||||||||||||||||| ||||||||| ||||| || ||||||| |||||| |
|
|
| T |
31108505 |
cattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaatctcgtc |
31108604 |
T |
|
| Q |
355 |
tgtaaaaatatcttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaataca |
454 |
Q |
| |
|
|||||||| ||||| | || | ||| |||| || |||| || ||||| |||||||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
31108605 |
agtaaaaatttcttcagaatttgtactagatgggcctccagcagaaacagatattatgtcaacaccatcatcaattgcttgatcaatagcagataataca |
31108704 |
T |
|
| Q |
455 |
tcggcaccaaagcagtcatcaagatctaacagagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaa |
554 |
Q |
| |
|
|| ||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||| |||| |
|
|
| T |
31108705 |
tcagcaccaaagcaactagtggcatctgttagagaccagcacactttgtaggttgcaactctagctcttggtgaacctccttttatggtaccatttccaa |
31108804 |
T |
|
| Q |
555 |
tagcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtggcc |
621 |
Q |
| |
|
| ||||| |||||| ||||||| || ||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
31108805 |
tgttaaatatgcttgcacctggtacgaaatttccaccagctgttgatagtgtgtgagtaccatggcc |
31108871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 156 - 630
Target Start/End: Original strand, 31146156 - 31146630
Alignment:
| Q |
156 |
ttaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagctac |
255 |
Q |
| |
|
||||| |||||||| ||| |||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
31146156 |
ttaaggatgataccgtgagtgttttgttattaatagtcatgacactgctgaagtctctgtctaatgtactagcagcaacagtgaacacccatggagcaac |
31146255 |
T |
|
| Q |
256 |
attcacaacacttccattggttggtccttcattacctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtct |
355 |
Q |
| |
|
||| |||||||||| ||| ||||||||||| || || || |||||||||||||||||||||| ||||||||| ||||| || ||||||| ||| || |
|
|
| T |
31146256 |
attagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaatctcatca |
31146355 |
T |
|
| Q |
356 |
gtaaaaatatcttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaatacat |
455 |
Q |
| |
|
||||||||| |||| |||| | || | ||| || |||| || || | |||| |||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
31146356 |
gtaaaaataacttcaggatttgtattaggtttgcctccagccgaaacagaaatcaaatcagcaccgtcgtaaattgcttgatcaatagcagctaatacat |
31146455 |
T |
|
| Q |
456 |
cggcaccaaagcagtcatcaagatctaacagagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaat |
555 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||| || |||||||||||||||| || | |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
31146456 |
cggcaccaaagcagtctacaacatctgttagagaccaacatgctttgtaggttgcaactcttgatcttggtgaaccaccttttatggtaccgttgccaat |
31146555 |
T |
|
| Q |
556 |
agcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtggcctaaaaagtc |
630 |
Q |
| |
|
| |||||| |||| | | |||| |||||||| || ||||||||||| || || || || ||||||| |||||| |
|
|
| T |
31146556 |
accaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctacaaagtc |
31146630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 156 - 630
Target Start/End: Original strand, 31163982 - 31164456
Alignment:
| Q |
156 |
ttaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagctac |
255 |
Q |
| |
|
||||| |||||||| ||| |||| ||||| |||||| ||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
31163982 |
ttaaggatgataccgtgagtgttctgttattaatggtcatgacactgctgaagtctctgtctaatgtactagcagcaacagtgaacacccatggagcaac |
31164081 |
T |
|
| Q |
256 |
attcacaacacttccattggttggtccttcattacctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtct |
355 |
Q |
| |
|
||| |||||||||| ||| ||||||||||| || || || |||||||||||||||||||||| ||||||||| ||||| || ||||||| ||| || |
|
|
| T |
31164082 |
attagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaatctcatca |
31164181 |
T |
|
| Q |
356 |
gtaaaaatatcttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaatacat |
455 |
Q |
| |
|
||||||||| |||| |||| | || | ||| || |||| || || | |||| |||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
31164182 |
gtaaaaataacttcaggatttgtattaggtttgcctccagccgaaacagaaatcaaatcagcaccgtcgtaaattgcttgatcaatagcagctaatacat |
31164281 |
T |
|
| Q |
456 |
cggcaccaaagcagtcatcaagatctaacagagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaat |
555 |
Q |
| |
|
||||||| |||||||| ||| |||| |||||||| || |||||||||||||||| || | |||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
31164282 |
cggcaccgaagcagtctacaacatctgttagagaccaacatgctttgtaggttgcaactcttgatcttggtgaaccaccttttatggtaccgttgccaat |
31164381 |
T |
|
| Q |
556 |
agcaaatacacttgcatctggtacaaagtttcccccagctgttgatagagtatgagtaccgtggcctaaaaagtc |
630 |
Q |
| |
|
| |||||| |||| | | |||| |||||||| || ||||||||||| || || || || ||||||| |||||| |
|
|
| T |
31164382 |
accaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctacaaagtc |
31164456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 166 - 463
Target Start/End: Original strand, 31050864 - 31051161
Alignment:
| Q |
166 |
taccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagctacattcacaaca |
265 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||| ||||| ||||| ||||| |||| |
|
|
| T |
31050864 |
taccgtgactgttttgttaccaatggttatagtactgctgaagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaaca |
31050963 |
T |
|
| Q |
266 |
cttccattggttggtccttcattacctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtctgtaaaaatat |
365 |
Q |
| |
|
|||||| ||||||||| |||| || ||||| |||||||||||||| ||| ||| | ||| || ||||| || ||||||| || || |||||||| | |
|
|
| T |
31050964 |
cttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagcgaatgcctgaaatgcacctattgaaatttcatcggtaaaaattt |
31051063 |
T |
|
| Q |
366 |
cttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggcacca |
463 |
Q |
| |
|
|||| || | ||| |||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
31051064 |
cttcaaaatttgaactagatcggcctccaacagaaactgagattatatcaacaccatcactaatggcttgatcgatagcagataatacatcagcacca |
31051161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 486 - 636
Target Start/End: Original strand, 31051196 - 31051346
Alignment:
| Q |
486 |
gagaccagcacactttgtaggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtt |
585 |
Q |
| |
|
||||||| ||||||||||||||| |||| || | | |||| ||||||||||| | ||||||||||| ||| |||||| |||||| ||||||| ||||| |
|
|
| T |
31051196 |
gagaccaacacactttgtaggttacaactcttgattttggtgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtt |
31051295 |
T |
|
| Q |
586 |
tcccccagctgttgatagagtatgagtaccgtggcctaaaaagtcgcgtgc |
636 |
Q |
| |
|
||| |||||||||||||| || |||||||| ||||| ||||||| ||||| |
|
|
| T |
31051296 |
tccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtcacgtgc |
31051346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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