View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13463_low_3 (Length: 469)
Name: NF13463_low_3
Description: NF13463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13463_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 1440556 - 1441015
Alignment:
| Q |
1 |
ttatttaacatctgtaaataggtgtgtgcgtgtgcgcgggcgcgcacaagaatgcaagtaaacgagtgcttgatttcagcagaatttctctttctttggt |
100 |
Q |
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| T |
1440556 |
ttatttaacatctgtaaataggtgtgtgcgtgtgggtgggcgcgcaaaagaatgcaagtaaacgagtgcttggtttcagcagaatttctctttctttggt |
1440655 |
T |
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| Q |
101 |
ctgctactcctggtagtaagattctatttggattttctgtcataacttacacaggc------------aacggtgctctattacaaagacagcaaaggaa |
188 |
Q |
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| T |
1440656 |
ctgctactcccggtagtaagattctatttggattttctgtcgtaccttaaacaggctgctccaaaaggaacggtgctctattacaaagacagcaaaggaa |
1440755 |
T |
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| Q |
189 |
tcatctattgagtaatccctttgtgtcaacactcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaacatgatgc |
288 |
Q |
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| T |
1440756 |
tcatctattgagtaatccctctgtgtcaacactcaacacgacctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaacatgatgc |
1440855 |
T |
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| Q |
289 |
gaggggaacaattgaagggtaacactctattagatgatggtatgtttaaagatagcgattggtttaaccaaatataattgactaccagcatgtcttgtgt |
388 |
Q |
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| T |
1440856 |
gaggggaacaattgaagggtaacactctattagatgatcgtatgtttaaagacagtgattggtttaaccaaatataattgactaccagcatgtcttgtgt |
1440955 |
T |
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| Q |
389 |
gacatatggattgaggacttgattctaagtacaacataggaactacaattgagagcatgg |
448 |
Q |
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| T |
1440956 |
gacatatggattgaggacttgattctaagtacaacgtaggaactacaattgagagcatgg |
1441015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 1453161 - 1453268
Alignment:
| Q |
221 |
tcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctat |
318 |
Q |
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| T |
1453161 |
tcaacatgacctgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttt |
1453260 |
T |
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| Q |
319 |
tagatgat |
326 |
Q |
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| T |
1453261 |
tagatgat |
1453268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 326
Target Start/End: Original strand, 1464853 - 1464960
Alignment:
| Q |
221 |
tcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctat |
318 |
Q |
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| T |
1464853 |
tcaacatgacctgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttt |
1464952 |
T |
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| Q |
319 |
tagatgat |
326 |
Q |
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| T |
1464953 |
tagatgat |
1464960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 41704446 - 41704491
Alignment:
| Q |
65 |
agtgcttgatttcagcagaatttctctttctttggtctgctactcc |
110 |
Q |
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| T |
41704446 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctcc |
41704491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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