View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13463_low_5 (Length: 315)
Name: NF13463_low_5
Description: NF13463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13463_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 40979466 - 40979190
Alignment:
| Q |
18 |
aatcagacactttcaatgtgatcaactaattaataaattaagggaagaaaaaacattattggatactcacaaatgcaagatttcaaacgaattcacatgc |
117 |
Q |
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| T |
40979466 |
aatcagacactttcaatgtgatcaactaattaataaattaagggaagaaaaaacattattggatactcacaaatgcaagatttcaaacgaattcacatgc |
40979367 |
T |
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| Q |
118 |
atgatctcaccacaccttcctttgtacaagcactacaaaattgagaatcttaatatatatactagtatgttatataaaatacactcatttaatgaaaaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||| |
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| T |
40979366 |
atgatctcaccacaccttcctttgtacaagcactacaaaattgagaatcttaata--tatactagtatgttatataaaatacactcatccattgaataag |
40979269 |
T |
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| Q |
218 |
ttactactactatttnnnnnnnngtgatatatccggtgaggatggatgagaggcaatggtagtggaaagtgctatggta |
296 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40979268 |
ttactactactatttaaaaaaaagtgatatatccgatgaggatggatgagaggcaatggtagtggaaagtgctctggta |
40979190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 8938829 - 8938871
Alignment:
| Q |
254 |
tgaggatggatgagaggcaatggtagtggaaagtgctatggta |
296 |
Q |
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| T |
8938829 |
tgaggatggatgagaggcaatggtggcggaaagtgctctggta |
8938871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 5859714 - 5859755
Alignment:
| Q |
249 |
tccggtgaggatggatgagaggcaatggtagtggaaagtgct |
290 |
Q |
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| T |
5859714 |
tccggtgaggatggatgagtggcaacggtggtggaaagtgct |
5859755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 19919250 - 19919202
Alignment:
| Q |
242 |
tgatatatccggtgaggatggatgagaggcaatggtagtggaaagtgct |
290 |
Q |
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|||||| ||||||||| ||||||||||||||||||| | ||||||||| |
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| T |
19919250 |
tgatatgtccggtgagaatggatgagaggcaatggtggcagaaagtgct |
19919202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 33101692 - 33101660
Alignment:
| Q |
241 |
gtgatatatccggtgaggatggatgagaggcaa |
273 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
33101692 |
gtgatttatccggtgaggatggatgagaggcaa |
33101660 |
T |
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