View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13463_low_6 (Length: 308)
Name: NF13463_low_6
Description: NF13463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13463_low_6 |
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| [»] scaffold0234 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 12699708 - 12699942
Alignment:
| Q |
19 |
acatttgacatcagggcattcacatcagtggagaaatacctgaagggaaagaactttggagaaggttttcacatcagctgatgatgaaatgcctgagggg |
118 |
Q |
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| T |
12699708 |
acatttgacatcagggctttcacatcagtggagaaatacttgaagggaaagaactttggagaaggttttcacaccagc---tgaggaaatgcctaagagg |
12699804 |
T |
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| Q |
119 |
aataatagatattaaagagttttcacatctgtagaact-aatgcctgagggcaaagataaacgcggtggcaatttcgttatatttttgaactttacatca |
217 |
Q |
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| T |
12699805 |
aataatagatactaaatagttttcacatctgtggaactaaatgactgagggaaaagataaacgcggtgacaatttcgtaatattagtgctctttacaaca |
12699904 |
T |
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| Q |
218 |
aatattgttcacatcagttgatatagtcagccgaaggg |
255 |
Q |
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| T |
12699905 |
aacattgttcacatcagtgaatacagtcagccgaaggg |
12699942 |
T |
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Target: scaffold0234 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0234
Description:
Target: scaffold0234; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 5049 - 5196
Alignment:
| Q |
52 |
aaatacctgaagggaaaga-actttggagaaggttttcacatcagctgatgatgaaatgcctgaggggaataatagatattaaagagttttcacatctgt |
150 |
Q |
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| T |
5049 |
aaatacctgatgggaaagatactttggatgaggttttcacttcaggtgaaga---aatggctgaggggaaaagtagaagcccaagagttttgacatcagt |
5145 |
T |
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| Q |
151 |
agaactaatgcctgagggcaaagataaacgcggtggcaatttcgttatatt |
201 |
Q |
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| T |
5146 |
ggaactaatgcatgaggggaaacataaacgcggtggcaattttgtaatatt |
5196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 9809496 - 9809430
Alignment:
| Q |
135 |
gagttttcacatctgtagaactaatgcctgagggcaaagataaacgcggtggcaatttcgttatatt |
201 |
Q |
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| T |
9809496 |
gagttttgacataagtggaactaatgcatgaggggaaacataaacgcggtggcaatttcgtaatatt |
9809430 |
T |
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