View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13463_low_8 (Length: 250)
Name: NF13463_low_8
Description: NF13463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13463_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31127478 - 31127709
Alignment:
| Q |
1 |
atatggtttacactcatgcggctttatgcgagagtatgagactgtatcctccggttcccgtggatggtaaggaagcggcttctgacgacgttttgccgga |
100 |
Q |
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| T |
31127478 |
atatggtttacactcatgcggctttatgtgagagtatgagactgtatcctccggttcccgtggatggtaaggaagcggcttgtgacgacgttttgccgga |
31127577 |
T |
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| Q |
101 |
tggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggtccgagaaaatatggggacccgattgggctgagtttcgacct |
200 |
Q |
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| T |
31127578 |
tggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggtccgagaaaatatggggacccgattgggctgagtttcgacct |
31127677 |
T |
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| Q |
201 |
gagagatggttgagccaagttgatgatggaaa |
232 |
Q |
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| T |
31127678 |
gagagatggttgagtcaagttgatgatggaaa |
31127709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31078160 - 31078388
Alignment:
| Q |
1 |
atatggtttacactcatgcggctttatgcgagagtatgagactgtatcctccggttcccgtggatggtaaggaagcggcttctgacgacgttttgccgga |
100 |
Q |
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|||||||||| ||||||||| | |||||||||||||||||||| |||||||| ||||| |||||| ||| ||||| || | | || |||||||| || |
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| T |
31078160 |
atatggtttatactcatgcgtcgttatgcgagagtatgagactttatcctccagttccagtggatactaaagaagcagcgtacaatgatgttttgccaga |
31078259 |
T |
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| Q |
101 |
tggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggtccgagaaaatatggggacccgattgggctgagtttcgacct |
200 |
Q |
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| T |
31078260 |
tggaacttttgtgaagaaagggtggagagtggcgtatcatatatatgctatgggaaggtcggagaaaatatggggacttgattgggctgagtttcgaccg |
31078359 |
T |
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| Q |
201 |
gagagatggttgagccaagttgatgatgg |
229 |
Q |
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| T |
31078360 |
gagaggtggttgagtcaagatgaggatgg |
31078388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31132186 - 31132417
Alignment:
| Q |
1 |
atatggtttacactcatgcggctttatgcgagagtatgagactgtatcctccggttcccgtggatggtaaggaagcggcttctgacgacgttttgccgga |
100 |
Q |
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||||||||||||||||||| | |||||||||||||||||| || | ||||| ||| | ||||||| ||||||||| || | || || |||||||| || |
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| T |
31132186 |
atatggtttacactcatgcatcgttatgcgagagtatgagaatggaccctccagtttcagtggatgctaaggaagcagcctacgatgatgttttgccaga |
31132285 |
T |
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| Q |
101 |
tggaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggtccgagaaaatatggggacccgattgggctgagtttcgacct |
200 |
Q |
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|||||| ||||||||||||||||||| || | |||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |
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| T |
31132286 |
tggaacattagtgaagaaagggtggatagttgcgtatcatgtatatgttatgggaaggtctgagaaaatatggggatccgattgggctgagttttgacct |
31132385 |
T |
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| Q |
201 |
gagagatggttgagccaagttgatgatggaaa |
232 |
Q |
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||||| |||||||| | || ||| |||||||| |
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| T |
31132386 |
gagaggtggttgagtcgagctgacgatggaaa |
31132417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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