View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13465_low_1 (Length: 507)
Name: NF13465_low_1
Description: NF13465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13465_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 175 - 490
Target Start/End: Complemental strand, 24642119 - 24641804
Alignment:
| Q |
175 |
gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
274 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24642119 |
gttcaatcaaaacagaatgattacgcgtaattacaaagcttacttttttctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
24642020 |
T |
|
| Q |
275 |
accaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagcta |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24642019 |
accaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagcta |
24641920 |
T |
|
| Q |
375 |
ctatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctttctcagatctcgaattggtgtatcgtcaactcattcat |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24641919 |
ctatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggataatcctttctcagatctcgaattggtgtatcgtcaactcattcat |
24641820 |
T |
|
| Q |
475 |
tttagtggttactttt |
490 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
24641819 |
tttagtggttactttt |
24641804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 175 - 491
Target Start/End: Complemental strand, 24693488 - 24693172
Alignment:
| Q |
175 |
gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
274 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24693488 |
gttcaatcaaaacagaatgattacgcataattacaaagcttattttattttgatgggtttgttggtgaatttagcttcaactaagtatgaagctttaaac |
24693389 |
T |
|
| Q |
275 |
accaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagcta |
374 |
Q |
| |
|
|| ||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24693388 |
actaacccatttaaaccactatctccaactatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgccagcta |
24693289 |
T |
|
| Q |
375 |
ctatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctttctcagatctcgaattggtgtatcgtcaactcattcat |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
24693288 |
ctatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctctctcagttctcgaattggtgtatcgtcaactcattcat |
24693189 |
T |
|
| Q |
475 |
tttagtggttacttttg |
491 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
24693188 |
tttagtggttacttttg |
24693172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 213 - 489
Target Start/End: Original strand, 24733205 - 24733487
Alignment:
| Q |
213 |
cttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaacacca------acccgtttcaaccactatccccaacaat |
306 |
Q |
| |
|
|||| |||||||| ||||| |||||||| |||||||| |||| ||||||||||||||||| || | |||| ||||||||| ||||||||| | |
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|
| T |
24733205 |
cttattttattctaatgggcatgttggtggctttagctgcaacgaagtatgaagctttaaaaactagtactaacccatttcaaccatcatccccaacttt |
24733304 |
T |
|
| Q |
307 |
gttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagctactatatatatctttcacttttctggtgttgtt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
24733305 |
gttgctgtttttgacatctctatgttgtcacacagtttcatccacagctgatatgagcttgccagctactatatatatctttcacatttctggtgttgtt |
24733404 |
T |
|
| Q |
407 |
ggatgtgagacacttttgtggattatcctttctcagatctcgaattggtgtatcgtcaactcattcattttagtggttacttt |
489 |
Q |
| |
|
|| || |||||||||||||||||||| |||||| | ||||||||||||||| ||||||||||| |||||||||||||||| |
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|
| T |
24733405 |
ggggtcgacacacttttgtggattatcctctctcagttttcgaattggtgtatcatcaactcattcgttttagtggttacttt |
24733487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 178 - 489
Target Start/End: Complemental strand, 24648887 - 24648572
Alignment:
| Q |
178 |
caatcaaaacaaaatgattacgcgtaattac---aaagcttactttattctgatgggtttgttggtgactttagcttcaact-aagtatgaagctttaaa |
273 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||| |||| ||| |||||||||||||||||||||||| |||||||| ||| || ||| ||| |||||| |
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|
| T |
24648887 |
caatcaaaataaaatgattacgcataagtactataaagtttattttattctgatgggtttgttggtgcctttagctgcaatggaaatatcaaggtttaaa |
24648788 |
T |
|
| Q |
274 |
caccaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagct |
373 |
Q |
| |
|
||| ||||| || ||||||| | || ||||||| | ||||||||||||||||||| | |||| |||||| ||| ||||||||| |||||||| || || |
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|
| T |
24648787 |
cactaacccattccaaccaccacccataacaatgctactgtttttgacatctctatttagtcatgcagttgcattcacagctgacatgagcttcccaact |
24648688 |
T |
|
| Q |
374 |
actatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctttctcagatctcgaattggtgtatcgtcaactcattca |
473 |
Q |
| |
|
||||||||||||||||| | || ||||||||||| || |||||||||||||||||| | |||||| ||||||||||||||||| ||||||||||| |
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|
| T |
24648687 |
actatatatatctttcatatctccggtgttgttggggtcgacacacttttgtggattatcatctctcagttctcgaattggtgtatcatcaactcattcg |
24648588 |
T |
|
| Q |
474 |
ttttagtggttacttt |
489 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
24648587 |
ttttagtggttacttt |
24648572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 24642293 - 24642185
Alignment:
| Q |
1 |
cctcggctcctgtcagccaaccatgaccaggatgactattcaaataattaactgactttatccttctctgtgttttattaaaccttcccaccattgtcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
24642293 |
cctcggctcctgtcagccaaccatgaccaggatgactattcaaataattaactgactttatccttctctgtgttttatcaaaccttcccaccattgtcca |
24642194 |
T |
|
| Q |
101 |
ctaacaatg |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
24642193 |
ctaacaatg |
24642185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 175 - 290
Target Start/End: Complemental strand, 24694574 - 24694459
Alignment:
| Q |
175 |
gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaac |
274 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
24694574 |
gttcaatcaaaacagaatgattacgcgtaattacaaagcttattttattctgatgggtttgttggtgtctttagcttcaactaagtatgaagctttaaac |
24694475 |
T |
|
| Q |
275 |
accaacccgtttcaac |
290 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
24694474 |
actaacccgtttcaac |
24694459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 342 - 446
Target Start/End: Complemental strand, 24720867 - 24720763
Alignment:
| Q |
342 |
tttcatccacagctgatatgagcttgtcagctactatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctttctca |
441 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||||| |
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|
| T |
24720867 |
tttcatccacagctgatatgagcttgccagctactatatatatctttcacatttctggtgttgttggatgtgagacgcttctgtggataatcctttctca |
24720768 |
T |
|
| Q |
442 |
gatct |
446 |
Q |
| |
|
||||| |
|
|
| T |
24720767 |
gatct |
24720763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 268 - 480
Target Start/End: Complemental strand, 24656562 - 24656350
Alignment:
| Q |
268 |
tttaaacaccaacccgtttcaaccactatccccaacaatgttgctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttg |
367 |
Q |
| |
|
||||||||||||||| || |||| | |||||||| ||||||||||||||||| || || |||||| |||||| || ||| ||||| |||||||| |
|
|
| T |
24656562 |
tttaaacaccaaccccttccaacaattatccccacttatgttgctgtttttgactgctagattttgtcatgcagttgcaaccatggctgacatgagcttc |
24656463 |
T |
|
| Q |
368 |
tcagctactatatatatctttcacttttctggtgttgttggatgtgagacacttttgtggattatcctttctcagatctcgaattggtgtatcgtcaact |
467 |
Q |
| |
|
| ||||||| | || |||||||||||||||||| ||||||||||||||||| | |||||| | || || | ||| |||||||| |||| |||||| |
|
|
| T |
24656462 |
ctaactactatgttcatatttcacttttctggtgttattggatgtgagacacttctttggattctgctccctgatttctggaattggtatatcatcaact |
24656363 |
T |
|
| Q |
468 |
cattcattttagt |
480 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
24656362 |
tattccttttagt |
24656350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 24695507 - 24695466
Alignment:
| Q |
31 |
gatgactattcaaataattaactgactttatccttctctgtg |
72 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
24695507 |
gatgactattcaaataattaacggactttatccttctttgtg |
24695466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 430
Target Start/End: Complemental strand, 24634415 - 24634296
Alignment:
| Q |
311 |
ctgtttttgacatctctatgttgtcacgcagtttcatccacagctgatatgagcttgtcagctactatatatatctttcacttttctggtgttgttggat |
410 |
Q |
| |
|
|||||||| || ||| ||| |||||| |||||| || ||| ||||| |||||||| || ||||||| || || ||||||||||||||| |||||| |
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|
| T |
24634415 |
ctgttttttacttctgtattttgtcatgcagttgcaaccatggctgacatgagcttaccaactactatgatcatattccacttttctggtgttattggat |
24634316 |
T |
|
| Q |
411 |
gtgagacacttttgtggatt |
430 |
Q |
| |
|
||||||||||| | |||||| |
|
|
| T |
24634315 |
gtgagacacttctttggatt |
24634296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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