View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13465_low_2 (Length: 434)
Name: NF13465_low_2
Description: NF13465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13465_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 7 - 417
Target Start/End: Complemental strand, 41085917 - 41085507
Alignment:
| Q |
7 |
tccaagaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggttcagaatt |
106 |
Q |
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| T |
41085917 |
tccaacaatattaacaatttgtcatcgacaccggaaagcgttgaaacggagaatgatgcagtggtccagcctcataaaccttttgatgaggttcagaatt |
41085818 |
T |
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| Q |
107 |
atggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgttctatggcc |
206 |
Q |
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| T |
41085817 |
atggaggtgaacatgagttgagtttgagtgggattgaatatgatcagtttgaagggtttctaggtgttgatgaagatgtggtacaagatgttctatggcc |
41085718 |
T |
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| Q |
207 |
tgattctaatgctatgaatatgatgatgtcatcttcttccaataattatacatggcaacaaccaccaccaatgatgcaaatggagttaccaggagagttg |
306 |
Q |
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| T |
41085717 |
tgattctaatgctatgaatatgatgatgtcatcttcttccaataattatacatggcaacaaccaccaccaatgatgcaaatggagttaccaggagagttg |
41085618 |
T |
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| Q |
307 |
gaactggaatactcaatgccattgccattgcccttgaataatgagaatggtactattaattccaattctactactagtgtcaatttaataagtgaaagtt |
406 |
Q |
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| T |
41085617 |
gaattggaatactcaatgccattgccattgcccttgaataatgagaatggtactattaattccaattctactactagtgtcaatttaataagtgaaagtt |
41085518 |
T |
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| Q |
407 |
ggaattcttgg |
417 |
Q |
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| T |
41085517 |
ggaattcttgg |
41085507 |
T |
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