View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13465_low_3 (Length: 380)
Name: NF13465_low_3
Description: NF13465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13465_low_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 19116131 - 19115768
Alignment:
| Q |
17 |
acaaagcaaatctttgatatcccaggtaacctttcaacttatgtcaccatccctttcattgaatattccattaaattaatataaatttaacaatttcttg |
116 |
Q |
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| T |
19116131 |
acaaagcaaatctttgacatcccaggtaacctttcaacttatgtcaccatccctttcattgaatattccattaaattaatataaatttaacaatttctta |
19116032 |
T |
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| Q |
117 |
attatactacagaatgtgatgatctagtgactgaatctgccataattggaatgttgagatatactcttgagcatgctgacagaaatattcctcagaaaac |
216 |
Q |
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| T |
19116031 |
attatactacagaatgtgatgatctagtgactgaatctgccataattggaatgttgagatatactcttgagcatgctgacaataatattcctcagaaaac |
19115932 |
T |
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| Q |
217 |
caatgttatgaataaggtctgtgctatttccacaaatttatagctataagctgatagtaaaagcttttttaagttgatatgactgagtgaaatagggtga |
316 |
Q |
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| T |
19115931 |
caatgttatgaataaggtctgtgctatttccccaaatttatagctataagctgataataaaagcttttttaagttgatatgactgagtgaaatagggtga |
19115832 |
T |
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| Q |
317 |
atgtttatatatcatagctacaagatggctggtaacaaagttattatggtgaaagtagtagaat |
380 |
Q |
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| T |
19115831 |
atgtttatatatcatagctacaagatggctgctaacaaagttattatggtgaaagtagtagaat |
19115768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 19109092 - 19108761
Alignment:
| Q |
17 |
acaaagcaaatctttgatatcccaggtaacctttcaacttatgtcaccatccctttcattgaatattc--------cattaaattaatataaatttaaca |
108 |
Q |
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| T |
19109092 |
acaaagcaaatttttgacatcccaggtggcctttgaacttatgccaccatccctttcattgaacattcttttatgtcattaagttaatataaatttaaca |
19108993 |
T |
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| Q |
109 |
atttcttgattatactacagaatgtgatgatctagtgactgaatctgccataattggaatgttgagatatactcttgagcatgctgacagaaatattcct |
208 |
Q |
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| T |
19108992 |
atttcttaattatccttcagactgtgatgacctagtgactgaatctgctatagttggaatgttaagatatactcttgagcatgctgatggaaattttcct |
19108893 |
T |
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| Q |
209 |
cagaaaaccaatgttatgaataaggtctgtgctatttccacaaatttatagctataagctgatagtaaaagcttttttaagttgatatgactgagtgaaa |
308 |
Q |
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| T |
19108892 |
cagaaaagcaatgttatgaataaggtttgcgctatttccccaaatttatagctacaagctgttaacaaaagcattttgaagttgatataactgagtgaaa |
19108793 |
T |
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| Q |
309 |
tagggtgaatgtttatatatcatagctacaag |
340 |
Q |
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| T |
19108792 |
tagggtgaaatattatatatcatagctacaag |
19108761 |
T |
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