View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13465_low_4 (Length: 345)
Name: NF13465_low_4
Description: NF13465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13465_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 32548589 - 32548417
Alignment:
| Q |
18 |
cttcataccatccaacccaccacccgcaacaccatcaaaatggttgtcccaactctccttcccttcacatcaaaatcaaatccaaatcatgttaaaacca |
117 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32548589 |
cttcataccaaccaacccaccaccagcaacaccatcaaaatggttgtcccaactctccttcccttcacatcaaaatcaaatccaaatcatgttaaaacca |
32548490 |
T |
|
| Q |
118 |
tgttacgaacatgttatgaacaatcatctctttaattattttcaccctaattgacagatgaaaaataccaaac |
190 |
Q |
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| T |
32548489 |
tgttacgaacatgttatgaacaaccatctctttaattattttcaccctaattgacagatgaaaaataccaaac |
32548417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 32944399 - 32944230
Alignment:
| Q |
21 |
cataccatccaacccaccacccgcaacaccatcaaaatggttgtcccaactctccttcccttcacatcaaaatcaaatccaaatcatgttaaaaccatgt |
120 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
32944399 |
cataccaaccaacccaccaccagcaacaccatcaaaatggttgtcccaactctccttcccttcacatcaaaatcaaatccaaatccagttaaaaccgtgt |
32944300 |
T |
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| Q |
121 |
tacgaacatgttatgaacaatcatctctttaattattttcaccctaattgacagatgaaaaataccaaac |
190 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32944299 |
tacgaacatgttatgaacaaccatctctttaattgttttcaccctaattgacagatgaaaaataccaaac |
32944230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 32944172 - 32944144
Alignment:
| Q |
248 |
gtaacaaaaccccattctatattttacca |
276 |
Q |
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| T |
32944172 |
gtaacaaaaccccattctatattttacca |
32944144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 33370790 - 33370621
Alignment:
| Q |
21 |
cataccatccaacccaccacccgcaacaccatcaaaatggttgtcccaactctccttcccttcacatcaaaatcaaatccaaatcatgttaaaaccatgt |
120 |
Q |
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|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
33370790 |
cataccaaccaacccaccaccagcaacaccatcaaaatggttgtcccaactctccttcccttcacatcaaaatcaaatccaaatccagttaaaaccgtgt |
33370691 |
T |
|
| Q |
121 |
tacgaacatgttatgaacaatcatctctttaattattttcaccctaattgacagatgaaaaataccaaac |
190 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33370690 |
tacgaacatgttatgaacaaccatctctttaattgttttcaccctaattgacagatgaaaaataccaaac |
33370621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 276
Target Start/End: Complemental strand, 33370563 - 33370535
Alignment:
| Q |
248 |
gtaacaaaaccccattctatattttacca |
276 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
33370563 |
gtaacaaaaccccattctatattttacca |
33370535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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