View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13465_low_7 (Length: 251)

Name: NF13465_low_7
Description: NF13465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13465_low_7
NF13465_low_7
[»] chr2 (4 HSPs)
chr2 (15-233)||(31645668-31645891)
chr2 (63-105)||(3044185-3044227)
chr2 (61-105)||(10166461-10166505)
chr2 (56-100)||(23480920-23480964)
[»] chr1 (6 HSPs)
chr1 (24-172)||(36016666-36016819)
chr1 (63-105)||(20505490-20505532)
chr1 (63-105)||(26676744-26676786)
chr1 (63-106)||(28756690-28756733)
chr1 (66-131)||(2884052-2884117)
chr1 (61-106)||(42966902-42966947)
[»] chr8 (4 HSPs)
chr8 (24-170)||(30998497-30998649)
chr8 (63-105)||(9932309-9932351)
chr8 (63-105)||(25582794-25582836)
chr8 (66-120)||(27529558-27529612)
[»] chr5 (3 HSPs)
chr5 (63-105)||(26369148-26369190)
chr5 (56-120)||(15259086-15259150)
chr5 (56-100)||(35101388-35101432)
[»] chr4 (3 HSPs)
chr4 (63-105)||(40850659-40850701)
chr4 (63-105)||(47590668-47590710)
chr4 (63-105)||(56024890-56024932)
[»] chr3 (3 HSPs)
chr3 (63-105)||(10436644-10436686)
chr3 (63-106)||(15029926-15029969)
chr3 (27-100)||(22649500-22649573)
[»] chr7 (2 HSPs)
chr7 (63-105)||(8123973-8124015)
chr7 (63-105)||(40858233-40858275)
[»] chr6 (3 HSPs)
chr6 (63-105)||(6029175-6029217)
chr6 (60-105)||(18972823-18972868)
chr6 (63-100)||(30987220-30987257)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 31645668 - 31645891
Alignment:
Q  15 aattatcgtgtgtttcatcaacaagaggactctttacaaactctttttgataaaattaagcttcaatcttattggtggctgaaagctaatcagattaatt 114  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||    
T  31645668 aattatcgtgtgttttgtcaacaagaggactctttacaaactctttttgataaaattaagcttcaattttattggtggccgaaagcgaatcagattaatt 31645767  T
Q  115 tggcttctacttatcaca-----tggtttaatcctttagtttgtttgtaaatcattttgtaatcgaggggctttaaacttttttgatttcgcatttcctt 209  Q
    ||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31645768 tggcttctacttatcacacgtggtggtttaatcctttagtttgtttgtgaatcattttgtaatcgaggcgctttaaacttttttgatttcgcatttcctt 31645867  T
Q  210 tagtatttgatgttatttattact 233  Q
    | ||||||||||||||||||||||    
T  31645868 tggtatttgatgttatttattact 31645891  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 3044185 - 3044227
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  3044185 gataaagttaagcttcaatcttactggtggctgaaagctaatc 3044227  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 10166461 - 10166505
Alignment:
Q  61 ttgataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||||||||||| | ||||||||||||||||| ||||| ||||    
T  10166461 ttgataaaattaagttgcaatcttattggtggctaaaagcaaatc 10166505  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 23480920 - 23480964
Alignment:
Q  56 tctttttgataaaattaagcttcaatcttattggtggctgaaagc 100  Q
    |||| |||| |||||||||||||||||||||| |||||| |||||    
T  23480920 tcttcttgacaaaattaagcttcaatcttattagtggctaaaagc 23480964  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 36016666 - 36016819
Alignment:
Q  24 gtgtttcatcaacaagaggactctttacaaactctttttgataaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggcttcta 123  Q
    ||||||| | || |||||| ||||||||||| | || | || ||||| |||||||||||||| |||||||||||||| |||| ||||||||  |||| ||    
T  36016666 gtgtttcctaaaaaagaggcctctttacaaagttttctcgacaaaatcaagcttcaatcttaatggtggctgaaagcaaatcggattaattctgctttta 36016765  T
Q  124 cttatcaca-----tggtttaatcctttagtttgtttgtaaatcattttgtaat 172  Q
    |||||||||     |||||||||||||||  |||||||  ||||||||||||||    
T  36016766 cttatcacatgtagtggtttaatcctttaacttgtttgagaatcattttgtaat 36016819  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 20505490 - 20505532
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  20505490 gataaagttaagcttcaatcttactggtggctgaaagctaatc 20505532  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 26676744 - 26676786
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  26676744 gataaagttaagcttcaatcttactggtggctgaaagctaatc 26676786  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 28756733 - 28756690
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatca 106  Q
    |||||| |||||||||||||||| |||||||||||||| |||||    
T  28756733 gataaagttaagcttcaatcttactggtggctgaaagcaaatca 28756690  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 2884052 - 2884117
Alignment:
Q  66 aaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggcttctacttatcac 131  Q
    |||||||||||||||| ||| ||||||||||||||  || | |||||||| |||| ||| ||||||    
T  2884052 aaaattaagcttcaatattactggtggctgaaagcgcataaaattaatttagcttttacctatcac 2884117  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 42966947 - 42966902
Alignment:
Q  61 ttgataaaattaagcttcaatcttattggtggctgaaagctaatca 106  Q
    |||||||||||||||||||||||||||  ||||| ||||| |||||    
T  42966947 ttgataaaattaagcttcaatcttattaatggctaaaagcaaatca 42966902  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 30998649 - 30998497
Alignment:
Q  24 gtgtttcatcaacaagaggactcttt-acaaactctttttgataaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggcttct 122  Q
    |||||||||||| |||||  |||||| ||||| |||| |||| ||||||||| ||||||| ||||| || |||||||| |||| | ||||||| |||| |    
T  30998649 gtgtttcatcaaaaagagacctcttttacaaattcttcttgacaaaattaagtttcaatcatattgatgtctgaaagcgaatcggcttaattttgctttt 30998550  T
Q  123 acttatcacatg-----gtttaatcctttagtttgtttgtaaatcattttgta 170  Q
    ||||||||||||     | |||| ||||||| ||| |||| ||||||||||||    
T  30998549 acttatcacatgtggtagcttaaccctttagcttgcttgtgaatcattttgta 30998497  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 9932351 - 9932309
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  9932351 gataaagttaagcttcaatcttactggtggctgaaagctaatc 9932309  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 25582836 - 25582794
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  25582836 gataaagttaagcttcaatcttactggtggctgaaagctaatc 25582794  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 27529558 - 27529612
Alignment:
Q  66 aaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggctt 120  Q
    ||||||||| ||||||| || |||||||||||||| |||||||| ||||| ||||    
T  27529558 aaaattaagtttcaatcatagtggtggctgaaagcaaatcagatcaattttgctt 27529612  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 26369190 - 26369148
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  26369190 gataaagttaagcttcaatcttactggtggctgaaagctaatc 26369148  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 15259150 - 15259086
Alignment:
Q  56 tctttttgataaaattaagcttcaatcttattggtggctgaaagctaatcagattaatttggctt 120  Q
    |||| |||| |||||||||||||||||||  || ||| ||||||| ||||| |||||||| ||||    
T  15259150 tcttcttgagaaaattaagcttcaatctttgtgatggttgaaagcaaatcatattaattttgctt 15259086  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 35101432 - 35101388
Alignment:
Q  56 tctttttgataaaattaagcttcaatcttattggtggctgaaagc 100  Q
    |||| |||| ||||||||||||||||||||||| ||| |||||||    
T  35101432 tcttcttgacaaaattaagcttcaatcttattgatggttgaaagc 35101388  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 40850659 - 40850701
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  40850659 gataaagttaagcttcaatcttactggtggctgaaagctaatc 40850701  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 47590710 - 47590668
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  47590710 gataaagttaagcttcaatcttattggtggctgaaagcaaatc 47590668  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 56024890 - 56024932
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||||||||||| ||||    
T  56024890 gataaagttaagcttcaatcttactggtggctgaaagcaaatc 56024932  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 10436686 - 10436644
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  10436686 gataaagttaagcttcaatcttactggtggctgaaagctaatc 10436644  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 15029926 - 15029969
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatca 106  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||    
T  15029926 gataaagttaagcttcaatcttattggtggttgaaagcgaatca 15029969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 22649500 - 22649573
Alignment:
Q  27 tttcatcaacaagaggactctttacaaactctttttgataaaattaagcttcaatcttattggtggctgaaagc 100  Q
    |||| ||||||||||  ||| |||||||  ||  |||| ||||||||||||||| ||| |||||||||||||||    
T  22649500 tttcgtcaacaagagtcctcgttacaaaaactacttgacaaaattaagcttcaaactttttggtggctgaaagc 22649573  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 8123973 - 8124015
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| |||||| ||||||||||||    
T  8123973 gataaagttaagcttcaatcttactggtggttgaaagctaatc 8124015  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 40858275 - 40858233
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||| || ||||||||||||||||    
T  40858275 gataaagttaagcttcaatcttactgatggctgaaagctaatc 40858233  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 6029175 - 6029217
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    |||||| |||||||||||||||||| |||||||||||| ||||    
T  6029175 gataaagttaagcttcaatcttattagtggctgaaagcgaatc 6029217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 18972868 - 18972823
Alignment:
Q  60 tttgataaaattaagcttcaatcttattggtggctgaaagctaatc 105  Q
    ||||||||| |||||||||||||||| | |||||||||||| ||||    
T  18972868 tttgataaagttaagcttcaatcttactcgtggctgaaagcaaatc 18972823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 30987257 - 30987220
Alignment:
Q  63 gataaaattaagcttcaatcttattggtggctgaaagc 100  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  30987257 gataaaattaaacttcaatcatattggtggctgaaagc 30987220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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