View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13466_high_3 (Length: 451)
Name: NF13466_high_3
Description: NF13466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13466_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 40415864 - 40416279
Alignment:
| Q |
18 |
gaacatgagaggaattgaagtttccccactccatgctaattacctgcaacattatatcatgaaatttaagattttatatnnnnnnntgagaccatcaaag |
117 |
Q |
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| T |
40415864 |
gaacatgagaggaattgaagtttccccactccatgctaattacctgcaacattatatcatgaaatttaagattttatataaaaaaatgagaccatcaaag |
40415963 |
T |
|
| Q |
118 |
atagttgggatgaattgttccagagaaattaagttcgaattctggttgaaacaatcttaattaaactttatttacctcccgagttctatattcactaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40415964 |
atagttgggatgaattgttccagagaaattaagtttgaattctggttgaaacaatcttaattaaactttatttacctcccgaattctatattcactaaaa |
40416063 |
T |
|
| Q |
218 |
tcccattccccttaaaaccggatggtttagataagtggttcttttgttctcgnnnnnnnnnnnnnnnnnnnnnnngcgtaaaaaacaatgtaaagactat |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40416064 |
tcccattcccctgaaaaccggatggtttagataagtggttcttttgttctcgttttttgatatattttttcttttgcgtaaaaaacaatgtaaagactat |
40416163 |
T |
|
| Q |
318 |
ggcagtcactaacaagttcatttgaattgggagatcgtgcaagctcactttcttgtgctggttcaacataagcagcatttgtgctcataccaagagttat |
417 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40416164 |
ggcagtcactaaccagttcatttgaattgggagatcgtgcaagctcactttcttgtgctggttcaacataagcagcatttgtgctcataccaagagttat |
40416263 |
T |
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| Q |
418 |
tgaagccacattgtct |
433 |
Q |
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|| ||||||||||||| |
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| T |
40416264 |
tgcagccacattgtct |
40416279 |
T |
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