View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13467_high_1 (Length: 547)
Name: NF13467_high_1
Description: NF13467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13467_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 86 - 529
Target Start/End: Original strand, 1352827 - 1353271
Alignment:
| Q |
86 |
acattacactaacggtaacaaaatgagaaccagaaaatatggcaccatttgt-acgtgtagaacactaacatggtatcttaaatactttgaagacactta |
184 |
Q |
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| T |
1352827 |
acattacactaatggtaacaaaatgagaactagaaaatatggcaccatttgttacatgtagaacactaacatgatatcttaaatactttgaagacactta |
1352926 |
T |
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| Q |
185 |
aattggaccccaggttaaaagaactaatataaatatgattcttttgtttaagcaatatttcctccggtctcatatatagaaagagtttgtgtttcgaact |
284 |
Q |
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| T |
1352927 |
aattggaccccaggttaaaagaaccaatataaatatgattcttttgtttaagcaatatttcctccgatctcatatataaaaagagtttatgtttcgaact |
1353026 |
T |
|
| Q |
285 |
tatcttataaagtcaaaatacgagtatattaccattccgaaaagaaaagaaaaacgagtatctcaaatgaattgcatgactatgtaaatgtatggtttat |
384 |
Q |
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| T |
1353027 |
tattttataaagttaaaatacgagtatatctcctttccgaaaagaaaagaaaaacgagtatctcaaatgaattgcatgactatgtaaatgtatggtttat |
1353126 |
T |
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| Q |
385 |
ccaaccgtagggaatcaaggttagacaaatctcaagtagactagttttgagtccaaagtacttcaaatttcatatgctaaatcatagttccaacaaaacc |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1353127 |
ccaaccgtagggaatcaaggttagacaaatctcaagtagactagttttgagtccaaagtacttcaaatttcacatgctaaatcatagttccaacaaaacc |
1353226 |
T |
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| Q |
485 |
agtagacaaaataaaaatctagggcaaatgtttatatacaattac |
529 |
Q |
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| T |
1353227 |
agtagacaaaataaaaatctagggcaaatgtatatatacaattac |
1353271 |
T |
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