View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13467_low_4 (Length: 416)
Name: NF13467_low_4
Description: NF13467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13467_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 52 - 388
Target Start/End: Complemental strand, 7292022 - 7291690
Alignment:
| Q |
52 |
aaacaataacaatgttcaatggattgaaaatgtgatactgatgatgaagatgaagaatggaaagttctggattatgtcgtgaagagggttgttggtagtt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7292022 |
aaacaataacaatgttcaatggattgaaaatgtgatactgatgatgaagatgaagaatggaaagttctggattatgtcgtgaagagggttgttggtagtt |
7291923 |
T |
|
| Q |
152 |
ttggaacactggagaaacagtgtgtacgtggaagtttgtaaccaatacaaaacaaacatgtgtacaacttagacaagattcgtgagatttgggcgtacac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7291922 |
ttggaacactggagaaacagtgtgtacgtggaagtttgtaaccaatacaaaacaaacatgtgtacaa---agacaagattcgtgagatttgggcgtacac |
7291826 |
T |
|
| Q |
252 |
aa-ggaggtgattaatggcaaaattgtttcaataacatttaacttaattttacattatannnnnnnnnnnncgatttagtcttttaagttctgaaatgct |
350 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
7291825 |
aagggaggtgattaatggcaaaattgattcaataacatttaacttaattttacattata--ttttttttttcaatttagtcttttaagttctgaaatgct |
7291728 |
T |
|
| Q |
351 |
attaccgttgttctttcttaaatgggatgaaagtcttt |
388 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7291727 |
attaccgttgtcctttcttaaatgggatgaaagtcttt |
7291690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 44339563 - 44339678
Alignment:
| Q |
8 |
tgagatgaacctgccattgaattgaattgaatttgataaagacaaaacaataacaatgttcaatggattgaaaatgtgatactgatgatgaagatgaaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
44339563 |
tgagatgaacctgccattgaattgaaccgaatttgatagagacaaaacaaaaacaatactcaatggattgaaaatgtgatacttatgatgccgatgaaga |
44339662 |
T |
|
| Q |
108 |
atggaaagttctggat |
123 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
44339663 |
aaagaaggttctggat |
44339678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 13567985 - 13568074
Alignment:
| Q |
8 |
tgagatgaacctgccattgaattgaattgaatttgataaagacaaaacaataacaatgttcaatggattgaaaatgtgatactgatgatga |
98 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
13567985 |
tgagatgaacctgccattaaattgaattgaatttgatagagacaaaacaaaaacaatactc-atggattgaaaaggtgatactgatgatga |
13568074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University