View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13468_low_2 (Length: 214)
Name: NF13468_low_2
Description: NF13468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13468_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 38321632 - 38321443
Alignment:
| Q |
7 |
tccaagaatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttcttt |
106 |
Q |
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| T |
38321632 |
tccaaaaatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttcttt |
38321533 |
T |
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| Q |
107 |
gcaccccagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccg |
196 |
Q |
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| T |
38321532 |
gcaccccagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccg |
38321443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 38300876 - 38300704
Alignment:
| Q |
18 |
atataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaa |
117 |
Q |
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|||||||||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | |||| |
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| T |
38300876 |
atataaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaa |
38300777 |
T |
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| Q |
118 |
gaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcac |
190 |
Q |
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| T |
38300776 |
ggagtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcac |
38300704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 183
Target Start/End: Complemental strand, 38317531 - 38317361
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
112 |
Q |
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| T |
38317531 |
aatatatataaacttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggc |
38317432 |
T |
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| Q |
113 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttc |
183 |
Q |
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| T |
38317431 |
cagaagaagtgcttttgctagaatacttgtcaaatagcatgtacaactttctctttactagttgcaacttc |
38317361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 38306778 - 38306600
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
112 |
Q |
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| T |
38306778 |
aatatatatgaacttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcatac |
38306679 |
T |
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| Q |
113 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcaca |
191 |
Q |
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| T |
38306678 |
cagaagaagtacttttgctagaatacttgtcaaatagcatgtacaactttgtctttactttttgcaacttccgttcaca |
38306600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 38309517 - 38309348
Alignment:
| Q |
24 |
acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata |
123 |
Q |
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|||||||||||||||||| |||||| ||||||| || |||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||| || |
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| T |
38309517 |
acttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagta |
38309418 |
T |
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| Q |
124 |
cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacagg |
193 |
Q |
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| T |
38309417 |
cttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcagg |
38309348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 38314116 - 38313942
Alignment:
| Q |
17 |
tatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccaga |
116 |
Q |
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||||||||| |||||||| |||| || |||||||||||| | |||||||||||||||||| ||||||||| | ||| ||||||| ||||||||| ||| |
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| T |
38314116 |
tatataaacgtacatcaactaggtcgagagatgaagactcagagttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctaga |
38314017 |
T |
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| Q |
117 |
agaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcaca |
191 |
Q |
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|||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||| |
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| T |
38314016 |
agaagtacttttgctagagtacttggcaaatagcatgtacaactttgtctttactttttgcaacttccgttcaca |
38313942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 38326369 - 38326196
Alignment:
| Q |
20 |
ataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaaga |
119 |
Q |
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|||||||||| |||||| ||||||||| ||||||| | ||||||||||||| |||| | ||||||| | |||||| ||||||||||| |||||||| |
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| T |
38326369 |
ataaacttaccccaaatataccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaaga |
38326270 |
T |
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| Q |
120 |
aatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacagg |
193 |
Q |
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| ||| || ||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||| |
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| T |
38326269 |
agtacgttggctagaatacttgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacagg |
38326196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 38849805 - 38849994
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctg---------aatagttc |
103 |
Q |
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|||||||| |||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
38849805 |
aatatataaaaacttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctgattctccttaatagttc |
38849904 |
T |
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| Q |
104 |
tttgcaccccagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacagg |
193 |
Q |
| |
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|||| ||||||| || | | || |||| ||||| ||| |||||||||||| ||||||| |||||||||| || | |||||||||||||| |
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| T |
38849905 |
tttgaaccccagcagtagtgctgttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacagg |
38849994 |
T |
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