View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13469_high_12 (Length: 395)

Name: NF13469_high_12
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13469_high_12
NF13469_high_12
[»] chr2 (1 HSPs)
chr2 (1-390)||(36840644-36841037)
[»] chr4 (4 HSPs)
chr4 (1-390)||(18342871-18343262)
chr4 (321-367)||(22101579-22101625)
chr4 (51-129)||(41737432-41737510)
chr4 (13-53)||(48288822-48288862)
[»] chr3 (3 HSPs)
chr3 (7-222)||(46699127-46699342)
chr3 (278-383)||(18375043-18375148)
chr3 (159-222)||(18375193-18375254)
[»] scaffold0002 (3 HSPs)
scaffold0002 (2-222)||(164272-164492)
scaffold0002 (279-390)||(164107-164218)
scaffold0002 (54-193)||(277652-277794)
[»] chr6 (1 HSPs)
chr6 (2-222)||(14249234-14249454)
[»] chr8 (1 HSPs)
chr8 (108-222)||(11542905-11543019)
[»] scaffold1779 (2 HSPs)
scaffold1779 (1-185)||(662-846)
scaffold1779 (312-384)||(452-524)
[»] chr7 (2 HSPs)
chr7 (159-220)||(46634212-46634273)
chr7 (279-389)||(46634322-46634436)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 36840644 - 36841037
Alignment:
Q  1 attacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840644 attacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgat 36840743  T
Q  101 tactagctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840744 tactagctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctat 36840843  T
Q  201 ctttcagtcaaaaagttgaagtnnnnnnnntattctgtgttc----nnnnnnnnnnngaaaccaacaattaccannnnnnncatactaaagacctatttc 296  Q
    ||||||||||||||||||||||        ||||||||||||               |||||||||||||||||       |||||||||||||||||||    
T  36840844 ctttcagtcaaaaagttgaagtaaaaaaaatattctgtgttcaaaaaaaaaaaaaaagaaaccaacaattaccatttttttcatactaaagacctatttc 36840943  T
Q  297 gttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttcttggac 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36840944 gttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttctgggac 36841037  T

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Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 18342871 - 18343262
Alignment:
Q  1 attacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342871 attacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgat 18342970  T
Q  101 tactagctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342971 tactagctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctat 18343070  T
Q  201 ctttcagtcaaaaagttgaagtnnnnnnnntattctgtgtt---cnnnnnnnnnnngaaaccaacaattaccannnnnnncatactaaagacctatttcg 297  Q
    ||||||||||||||||||||||        |||||||||||               |||||||||||||||||       ||||||||||||||||||||    
T  18343071 ctttcagtcaaaaagttgaagtaaaaaaaatattctgtgttacaaaaaaaaaaaaagaaaccaacaattacca-ttttttcatactaaagacctatttcg 18343169  T
Q  298 ttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttcttggac 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18343170 ttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttctgggac 18343262  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 321 - 367
Target Start/End: Original strand, 22101579 - 22101625
Alignment:
Q  321 tgaattgagttcgtataggcattttggatgccgctattgaaatagcc 367  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  22101579 tgaattgagttcgtatagacattttggatgccgctattgaaatagcc 22101625  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 41737510 - 41737432
Alignment:
Q  51 ttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatc 129  Q
    |||||| ||||| ||||||| | ||||||||| |||||||||  | ||||||||| ||||| ||||| |||||||||||    
T  41737510 tttttttattactgcaacaaaattgtcaccaacataagcataatgccgattactatctcctgtgatttgaatacacatc 41737432  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 48288822 - 48288862
Alignment:
Q  13 atcacttcagatctttctaaagatgaatttggtactgcttt 53  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  48288822 atcacttcagatctttctaaagatgaatttgatactccttt 48288862  T

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Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 46699127 - 46699342
Alignment:
Q  7 gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46699127 gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag 46699226  T
Q  107 ctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46699227 ctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttca 46699326  T
Q  207 gtcaaaaagttgaagt 222  Q
    ||||||||||||||||    
T  46699327 gtcaaaaagttgaagt 46699342  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 278 - 383
Target Start/End: Complemental strand, 18375148 - 18375043
Alignment:
Q  278 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 377  Q
    |||| |||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18375148 catattaaagatctatttcgttctaatagttattctcaaagaataaattgagttcgtataggcattttggatgccgctattgaaatattctttctagcta 18375049  T
Q  378 tatttt 383  Q
    ||||||    
T  18375048 tatttt 18375043  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 18375254 - 18375193
Alignment:
Q  159 atttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 222  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||    
T  18375254 atttaaataggtttgaggttgaatcatat-attttttt-tatctttcaatcaaaaagttgaagt 18375193  T

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Target: scaffold0002 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 164492 - 164272
Alignment:
Q  2 ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgatt 101  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  164492 ttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgatt 164393  T
Q  102 actagctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatc 201  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  164392 actagctcctatgattcgaatacagatcaattcacgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcattttttactatc 164293  T
Q  202 tttcagtcaaaaagttgaagt 222  Q
    |||||||||||||||||||||    
T  164292 tttcagtcaaaaagttgaagt 164272  T

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Target: scaffold0002; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 279 - 390
Target Start/End: Complemental strand, 164218 - 164107
Alignment:
Q  279 atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctat 378  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  164218 atactaaagacctatttcgatctaatgattattctgaaagaatgaattgagttcttataggcattttggatgccgctattgaaatagcctttctagctat 164119  T
Q  379 attttcttggac 390  Q
    ||||||| ||||    
T  164118 attttctgggac 164107  T

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Target: scaffold0002; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 277652 - 277794
Alignment:
Q  54 tttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagc---tcctatgattcgaatacacatcaattcgcgggctccgctatta 150  Q
    ||||||||||||||||| ||  |||||||||  |||||| ||  |||||| |||   |||||||| |||||||||||||||||  || ||||| |||||     
T  277652 tttgattacagcaacaataacatcaccaatacgagcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccactattg 277751  T
Q  151 tcggctacatttaaataggtttgaggttgaatcatatcatttt 193  Q
    || ||||||||||||  ||| |||||||||||||||| |||||    
T  277752 tctgctacatttaaaagggtctgaggttgaatcatattatttt 277794  T

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Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 14249234 - 14249454
Alignment:
Q  2 ttacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgatt 101  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  14249234 ttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgatt 14249333  T
Q  102 actagctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatc 201  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14249334 actagctcctatgattcgaatacagatcaattcacgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcattttttactatc 14249433  T
Q  202 tttcagtcaaaaagttgaagt 222  Q
    |||||||||||||||||||||    
T  14249434 tttcagtcaaaaagttgaagt 14249454  T

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Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 11542905 - 11543019
Alignment:
Q  108 tcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11542905 tcctatgattcgaatacacatcaattcgcgggctccgctattatcggctatatttaaataggtttgaggttgaatcatatcatttttttctatctttcag 11543004  T
Q  208 tcaaaaagttgaagt 222  Q
    |||||||||||||||    
T  11543005 tcaaaaagttgaagt 11543019  T

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Target: scaffold1779 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 846 - 662
Alignment:
Q  1 attacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgat 100  Q
    |||||||| ||||||||||| |||||||||| || || ||||||||||||||  ||||| |||||||||| || ||||||||||| |||||| || ||||    
T  846 attacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcaccaatatgagcatatcggcgat 747  T
Q  101 tactagctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcat 185  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| |||||||| |||| ||| ||||||||||||||    
T  746 tactagctcctatgactcgaatacacatcaattctcgggccccgctgttatctgctacattcaaatgggtctgaggttgaatcat 662  T

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Target: scaffold1779; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 524 - 452
Alignment:
Q  312 ctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttc 384  Q
    |||||| ||||||||| |||  |||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  524 ctgaaataatgaattgcgtttttataggcatttttgacgccgctattgaaatagcctttctggctatattttc 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 46634212 - 46634273
Alignment:
Q  159 atttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaa 220  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46634212 atttaagtaggtttgaggttgaatcatatcatttttttctatctttcaatcaaaaagttgaa 46634273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 279 - 389
Target Start/End: Original strand, 46634322 - 46634436
Alignment:
Q  279 atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggat-----gccgctattgaaatagcctttcta 373  Q
    ||||||||||| ||||| |||||||| ||| ||||||||||||| |||  ||| |||||||||| ||||||     || |||||||||||||| ||||||    
T  46634322 atactaaagacatatttggttctaattattcttctgaaagaatg-attaggtttgtataggcatcttggatgtcgcgctgctattgaaatagcttttcta 46634420  T
Q  374 gctatattttcttgga 389  Q
    |||||||||| |||||    
T  46634421 gctatatttttttgga 46634436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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