View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13469_high_14 (Length: 361)
Name: NF13469_high_14
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_14 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 69 - 361
Target Start/End: Complemental strand, 18153238 - 18152946
Alignment:
| Q |
69 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153238 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
18153139 |
T |
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| Q |
169 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18153138 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
18153039 |
T |
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| Q |
269 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg |
361 |
Q |
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| T |
18153038 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg |
18152946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 1785691 - 1785790
Alignment:
| Q |
262 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg |
361 |
Q |
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| T |
1785691 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg |
1785790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 77 - 361
Target Start/End: Original strand, 222478 - 222762
Alignment:
| Q |
77 |
gaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaa |
176 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| ||| ||| |
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| T |
222478 |
gaggcttcaagaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatccatgggtatttgaacccgagtacccgggaaaaagcagaa |
222577 |
T |
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| Q |
177 |
tatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatgg |
276 |
Q |
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||||||||||||||||||| | | ||||| || |||||| ||||||| ||| | ||||| || ||||||||||||||||||||||| ||||| ||||| |
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| T |
222578 |
tatttgatggaagaacaggcgacccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgatgagaaaattcatgg |
222677 |
T |
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| Q |
277 |
acgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg |
361 |
Q |
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| T |
222678 |
gcgttctactgggccctactcacttgttacacaacaaccggttagaggaagagccaagcaagggggacaacgagtaggagaaatg |
222762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 248 - 361
Target Start/End: Complemental strand, 23937344 - 23937231
Alignment:
| Q |
248 |
attcatcaagttgatgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaac |
347 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23937344 |
attcatcaagttgatgataaaatacatggacgtttcagtggacattatgcacttgttacacaacaaccccttaaaggaagggtgaaacaaggaggacaac |
23937245 |
T |
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| Q |
348 |
gggtaggcgaaatg |
361 |
Q |
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| T |
23937244 |
tggtaggcaaaatg |
23937231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 47586031 - 47586066
Alignment:
| Q |
184 |
tggaagaacagggaatctttttgaacagcctgttat |
219 |
Q |
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| T |
47586031 |
tggaagaacagggaatctttttgaacagcctgttat |
47586066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 22998273 - 22998200
Alignment:
| Q |
116 |
gccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatggaag |
189 |
Q |
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|||| |||| ||||||| |||||||| |||||| | || ||||||||||||| |||| ||||||| ||||||| |
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| T |
22998273 |
gccaataaagaaacatccaatccatgaatatttcagcctaagtatccgggaaaaagcgaaatattttatggaag |
22998200 |
T |
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