View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13469_high_16 (Length: 357)
Name: NF13469_high_16
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 29488533 - 29488874
Alignment:
| Q |
1 |
gattattccaatgagaacttcatttacaatcaaacctcaactttaactataaaaattacaaaaagtaaatataaaacatttgaatcacttttgtcgattg |
100 |
Q |
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| T |
29488533 |
gattattccaatgacaacttcatttacaatcaaacctcaactttaactacaaaaattacaaaaagtaaatataaaacacttgaatcacttttgtcgattg |
29488632 |
T |
|
| Q |
101 |
aggacttacacttggccaaaagttacaaccaataccatgccatatgttacaactttaactttgttttctaaaaccacatcaaatattttaaaactataaa |
200 |
Q |
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| T |
29488633 |
aggacttacacttggccaaaagttacaaccaataccatgccatatgttacaactttaactttgttttctaaaaccacatcaaatatttaaaaactataat |
29488732 |
T |
|
| Q |
201 |
cattaataatcactatatatatgcattatggtcacaaagtctaatggatatactaaccaaacaaatcatatacaacttcttccatctaatcaatcaccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29488733 |
cattaataatcactatatatatgcattatggtcacaaagtctaatggatatactaaacaaacaaatcatatacaacttcttccatctaatcaatcaccat |
29488832 |
T |
|
| Q |
301 |
tataatatttaacacaacaataatagttaatccttcatccat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
29488833 |
tataatatttaacacaacaataatagttaatccttcatccat |
29488874 |
T |
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