View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13469_high_18 (Length: 356)
Name: NF13469_high_18
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 44766998 - 44767345
Alignment:
| Q |
1 |
gtatacaatatacacagtgataataaaacaaagcgcaacagagggaaacaaaaaagaaccaagaaaataatgaagttatatccatgattttatatacact |
100 |
Q |
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| T |
44766998 |
gtatacaatatacacagtgataataaaacaaagcgcaacagagggaaacaaaaaagaaccaagaaaataatgaagttatatccatgattttatatacact |
44767097 |
T |
|
| Q |
101 |
acagaatacaacatatatgtaaaggaaaccagcctaaataaaatggaagacacttaacttaaaagagaaatttttnnnnnnnggttgaagagaaaaatga |
200 |
Q |
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| T |
44767098 |
acagaatacaacatatatgtaaaggaaaccagcctaaataaaatggaagacacttaacttaaaagagaaatttttaaaaaaaggttgaagagaaaaatga |
44767197 |
T |
|
| Q |
201 |
tagataataaaaggtgcctggttccttcatattgatttcctacaattatattcattgcaat--aatgtgtctaaaaggagaacttttctccatctatttt |
298 |
Q |
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| T |
44767198 |
tagataataaaaggtgcctggttccttcatattgatttcctacaattatattcattgcaataaaatgtgtctaaaaggagaacttttctccatctatttt |
44767297 |
T |
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| Q |
299 |
cctaaaactattatagaacaggtgaaccagcactctctgccctctgtg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44767298 |
cctaaaactattatagaacaggtgaaccagcactctctgccctctgtg |
44767345 |
T |
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