View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13469_high_27 (Length: 318)
Name: NF13469_high_27
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 36467596 - 36467903
Alignment:
| Q |
1 |
ccatggtaatggtgtttgcaatgagcaagggaaaaagaactttgatggttacaaatgcatcaatgatgtgacagatgatgatgtaaaggatatggaattc |
100 |
Q |
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| T |
36467596 |
ccatggtaatggtgtttgcaatgagcaagggaaaaagaactttgatggttacaaatgcatcaatgatgtgacagatgatgatgtaagggatatggaattc |
36467695 |
T |
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| Q |
101 |
aacacagaggatgaagctacggagttttatgtattgtttgcaaaataccacgggtttgaagtaagaaaggatgatgtgaaacgttattctaatgggaaca |
200 |
Q |
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| T |
36467696 |
aacacagaggatgaagctacggagttttatgtattgtttgcaaaataccacgggtttgaagtaagaaaggatgatgtgaaacgttattctaatgggaaca |
36467795 |
T |
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| Q |
201 |
ttattatgcgtcaattagtatgcaaaaagaagaatgcattgtaactatttggatgtctgctgtatggttatgtggattggttgtgtgcgttttctacttg |
300 |
Q |
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| T |
36467796 |
ttattatgcgtcaattagtatgcaaaaagaagaatgcattgtaactatttggatgtctgctgtatggttatgtggattggttgtgtgcgttttctacttg |
36467895 |
T |
|
| Q |
301 |
gatctgtg |
308 |
Q |
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| T |
36467896 |
gatctgtg |
36467903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28738817 - 28738898
Alignment:
| Q |
1 |
ccatggtaatggtgtttgcaatgagcaagggaaaa-agaactttgatggttacaaatgcatcaatgatgtgacagatgatga |
81 |
Q |
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| T |
28738817 |
ccatggtaatggtgtttgcagtgagcaagggaaaagagaattccaatggttacaaatgcattagtaatgtgacaaatgatga |
28738898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28718506 - 28718587
Alignment:
| Q |
1 |
ccatggtaatggtgtttgcaatgagcaagggaaaa-agaactttgatggttacaaatgcatcaatgatgtgacagatgatga |
81 |
Q |
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|||||||||||||||||||| ||||||| ||||| |||| | | |||| ||||||||||||| ||||||||| ||||||| |
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| T |
28718506 |
ccatggtaatggtgtttgcagtgagcaattgaaaagagaattctaatggctacaaatgcatcagtgatgtgaccaatgatga |
28718587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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