View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13469_high_29 (Length: 316)

Name: NF13469_high_29
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13469_high_29
NF13469_high_29
[»] chr6 (19 HSPs)
chr6 (12-316)||(19012104-19012408)
chr6 (12-316)||(19019735-19020038)
chr6 (88-314)||(22466986-22467211)
chr6 (243-307)||(13727922-13727984)
chr6 (243-307)||(18929662-18929724)
chr6 (243-307)||(19011901-19011963)
chr6 (243-307)||(20090722-20090784)
chr6 (243-314)||(18929868-18929937)
chr6 (243-307)||(8667908-8667970)
chr6 (243-307)||(16688374-16688436)
chr6 (247-307)||(17997097-17997155)
chr6 (236-314)||(16688156-16688232)
chr6 (243-305)||(19019534-19019594)
chr6 (283-316)||(8667734-8667767)
chr6 (246-302)||(17997307-17997361)
chr6 (243-307)||(19573912-19573974)
chr6 (243-284)||(22467354-22467395)
chr6 (250-306)||(13809479-13809534)
chr6 (246-282)||(20090981-20091017)
[»] chr2 (9 HSPs)
chr2 (12-316)||(7311327-7311630)
chr2 (243-307)||(23696339-23696401)
chr2 (243-307)||(26120861-26120923)
chr2 (243-307)||(26126323-26126385)
chr2 (243-305)||(7311125-7311185)
chr2 (243-307)||(4876604-4876666)
chr2 (225-284)||(23696117-23696176)
chr2 (243-302)||(4876382-4876439)
chr2 (243-304)||(9001570-9001630)
[»] scaffold0202 (2 HSPs)
scaffold0202 (33-312)||(10829-11105)
scaffold0202 (243-307)||(10622-10684)
[»] chr1 (14 HSPs)
chr1 (184-316)||(15154804-15154935)
chr1 (184-313)||(19911616-19911746)
chr1 (243-306)||(19751340-19751401)
chr1 (243-305)||(15142894-15142954)
chr1 (243-305)||(15154603-15154663)
chr1 (243-307)||(12020476-12020538)
chr1 (243-307)||(19751563-19751625)
chr1 (243-307)||(20435482-20435544)
chr1 (243-307)||(24277080-24277142)
chr1 (243-314)||(20435686-20435755)
chr1 (66-176)||(20435823-20435933)
chr1 (243-307)||(20514188-20514250)
chr1 (243-302)||(24277308-24277365)
chr1 (243-302)||(24277597-24277653)
[»] chr4 (8 HSPs)
chr4 (184-314)||(725750-725880)
chr4 (243-307)||(23881951-23882013)
chr4 (243-307)||(27788868-27788930)
chr4 (243-306)||(10757061-10757122)
chr4 (243-306)||(10970232-10970293)
chr4 (243-306)||(23882177-23882238)
chr4 (243-284)||(27788646-27788687)
chr4 (246-284)||(23881750-23881788)
[»] chr3 (21 HSPs)
chr3 (184-306)||(20009314-20009435)
chr3 (184-306)||(19777654-19777776)
chr3 (243-316)||(26901029-26901100)
chr3 (184-304)||(19803505-19803625)
chr3 (243-316)||(18560086-18560157)
chr3 (243-307)||(8854312-8854374)
chr3 (243-307)||(26900826-26900888)
chr3 (243-302)||(95019-95076)
chr3 (243-314)||(10774193-10774262)
chr3 (246-307)||(17601509-17601568)
chr3 (243-307)||(94792-94854)
chr3 (243-307)||(8854482-8854544)
chr3 (243-306)||(14561325-14561386)
chr3 (243-284)||(10813494-10813535)
chr3 (243-304)||(16091452-16091511)
chr3 (247-284)||(10813277-10813314)
chr3 (243-307)||(16091656-16091718)
chr3 (243-304)||(12206950-12207010)
chr3 (193-306)||(2692330-2692443)
chr3 (116-177)||(5195020-5195081)
chr3 (243-313)||(20009113-20009182)
[»] chr8 (23 HSPs)
chr8 (184-314)||(18977049-18977179)
chr8 (243-316)||(3302774-3302845)
chr8 (184-307)||(26905731-26905855)
chr8 (66-314)||(21834251-21834498)
chr8 (243-307)||(14676391-14676453)
chr8 (243-307)||(21834641-21834703)
chr8 (243-307)||(36281540-36281602)
chr8 (243-307)||(36281711-36281773)
chr8 (243-314)||(14676169-14676238)
chr8 (243-307)||(21408188-21408250)
chr8 (243-307)||(21802680-21802742)
chr8 (243-307)||(31710944-31711006)
chr8 (243-302)||(3302986-3303043)
chr8 (243-307)||(20132062-20132124)
chr8 (246-302)||(21938228-21938282)
chr8 (243-307)||(21938429-21938491)
chr8 (233-305)||(36602340-36602411)
chr8 (243-307)||(14369540-14369602)
chr8 (243-307)||(14370091-14370153)
chr8 (243-304)||(44754002-44754062)
chr8 (244-284)||(22191724-22191764)
chr8 (243-302)||(31710722-31710779)
chr8 (242-302)||(17526849-17526908)
[»] chr7 (12 HSPs)
chr7 (184-314)||(5328786-5328916)
chr7 (184-304)||(15828865-15828985)
chr7 (184-304)||(37279091-37279211)
chr7 (243-307)||(23522531-23522593)
chr7 (243-307)||(11544550-11544612)
chr7 (243-302)||(23522759-23522816)
chr7 (243-301)||(11544329-11544385)
chr7 (246-307)||(11099969-11100028)
chr7 (243-284)||(11527146-11527187)
chr7 (243-307)||(44359944-44360006)
chr7 (251-307)||(2591999-2592054)
chr7 (12-56)||(11544072-11544116)
[»] chr5 (10 HSPs)
chr5 (184-313)||(40569832-40569961)
chr5 (243-307)||(8459986-8460048)
chr5 (243-307)||(26857689-26857751)
chr5 (243-307)||(38840322-38840384)
chr5 (243-307)||(38840493-38840555)
chr5 (243-307)||(40936419-40936481)
chr5 (243-306)||(26857913-26857974)
chr5 (243-308)||(32965593-32965656)
chr5 (243-284)||(40936214-40936255)
chr5 (242-304)||(15213106-15213168)
[»] scaffold0010 (1 HSPs)
scaffold0010 (184-304)||(244803-244923)
[»] scaffold0878 (2 HSPs)
scaffold0878 (243-307)||(1650-1712)
scaffold0878 (243-307)||(4062-4124)
[»] scaffold0139 (2 HSPs)
scaffold0139 (243-307)||(3152-3214)
scaffold0139 (243-301)||(3333-3389)
[»] scaffold0037 (1 HSPs)
scaffold0037 (243-307)||(20790-20852)
[»] scaffold0369 (1 HSPs)
scaffold0369 (243-307)||(7371-7433)
[»] scaffold0320 (2 HSPs)
scaffold0320 (243-307)||(11844-11906)
scaffold0320 (225-301)||(11615-11688)
[»] scaffold1555 (1 HSPs)
scaffold1555 (233-305)||(1153-1224)
[»] scaffold0179 (2 HSPs)
scaffold0179 (243-304)||(27314-27373)
scaffold0179 (246-284)||(27113-27151)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 19012408 - 19012104
Alignment:
Q  12 atgaaatgagaagggaagagttttccgcctctttttaagggaaaaaagtagctctctcgaaaaacgtgccgagtcggcggatcattgacacgtgggacat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  19012408 atgaaatgagaagggaagagttttccgcctctttttaagggaaaaaagtagctctctcgaaaaacgtgtcgagtcggcggatcgttgacacgtgggacat 19012309  T
Q  112 atcgaacgaaaaggtaacacggcatcagaacagcaaaagtcggaagatgtggaccgttggatgaaggggacatcataaacagaaccatcccgcccaaacg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19012308 atcgaacgaaaaggtaacacggcatcagaacagcaaaagtcggaagatgtggaccgttggatgaaggggacatcataaacagaaccatcccgcccaaacg 19012209  T
Q  212 tattaaagcgtccagaccgcataaagaatttaagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19012208 tattaaagcgtccagaccgcataaagaatttaagcaccacgccttgtaccaagacttgtgcttgggggctgtgtggaccgtcattatattcctaagagtt 19012109  T
Q  312 taggg 316  Q
    |||||    
T  19012108 taggg 19012104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 19020038 - 19019735
Alignment:
Q  12 atgaaatgagaagggaagagttttccgcctctttttaagggaaaaaagtagctctctcgaaaaacgtgccgagtcggcggatcattgacacgtgggacat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||     
T  19020038 atgaaatgagaagggaagagttttccgcctctttttaagggaaaaaggtagctctctcgaaaaacgtgccgattcagcggatcgttgacacgtgggacag 19019939  T
Q  112 atcgaacgaaaaggtaacacggcatcagaacagcaaaagtcggaagatgtggaccgttggatgaaggggacatcataaacagaaccatcccgcccaaacg 211  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  19019938 atcgaacgaaaaggtaactcgccatcagaacagcaaaagtcggaagatgtggaccgttggatgaaggggacaacataaacagaaccatcccacccaaacg 19019839  T
Q  212 tattaaagcgtccagaccgcataaagaatt-taagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagt 310  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  19019838 tattaaagcgtccagaccgcataaagaattaaaagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcattatattcctaagagt 19019741  T
Q  311 ttaggg 316  Q
    ||||||    
T  19019740 ttaggg 19019735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 88 - 314
Target Start/End: Original strand, 22466986 - 22467211
Alignment:
Q  88 gcggatcattgacacgtgggacatatcgaacgaaaaggtaacacggcatcagaacagcaaaagtcggaagatgtggaccgttggatgaaggggacatcat 187  Q
    ||||||| | ||||||||  ||| |||||| |||||||||||||| ||| ||||  ||||| ||||| ||||||| |||||||||||||  || ||||      
T  22466986 gcggatcctagacacgtgtaacagatcgaatgaaaaggtaacacgtcattagaaatgcaaaggtcgggagatgtgcaccgttggatgaaaagggcatcgc 22467085  T
Q  188 aaacagaaccatcccgccc-aaacgtattaaagcgtcca---gaccgcataaagaatttaagcaccacgccttgtaccaagacttatgcttgggggctgt 283  Q
    ||| ||||||||| ||||| ||||  |||||| ||  ||   || | | | | ||||| || ||||||||||||||||||||||| |||||||||||  |    
T  22467086 aaatagaaccatctcgcccgaaac--attaaaacgctcataagatcacttta-gaattaaaacaccacgccttgtaccaagacttgtgcttgggggc--t 22467180  T
Q  284 gtggaccgtcattatattcctaagagtttag 314  Q
    |||||||||||| ||||||| ||||| ||||    
T  22467181 gtggaccgtcataatattccgaagagcttag 22467211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 13727984 - 13727922
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  13727984 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 13727922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 18929724 - 18929662
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  18929724 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 18929662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 19011963 - 19011901
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  19011963 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 19011901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 20090784 - 20090722
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  20090784 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 20090722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 18929937 - 18929868
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtttag 314  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||| | |||||||    
T  18929937 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctcaaagtttag 18929868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 8667908 - 8667970
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    ||||||||||||||||||||| |||| |||||||||||  ||||||||||||| |||||||||||    
T  8667908 aagcaccacgccttgtaccaatacttgtgcttgggggc--tgtggaccgtcataatattcctaag 8667970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 16688374 - 16688436
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||| ||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  16688374 aagcaccacgtcttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 16688436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 17997155 - 17997097
Alignment:
Q  247 accacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  17997155 accacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 17997097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 16688156 - 16688232
Alignment:
Q  236 agaatttaagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtttag 314  Q
    |||||| |||||||||| ||||||||||||||| |||||||||||  | ||||||||||| ||||||| ||||| ||||    
T  16688156 agaattaaagcaccacgtcttgtaccaagacttgtgcttgggggc--tatggaccgtcataatattccgaagagcttag 16688232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 19019594 - 19019534
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattccta 305  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||| ||||| |||||||||    
T  19019594 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggactgtcataatattccta 19019534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 8667734 - 8667767
Alignment:
Q  283 tgtggaccgtcattatattcctaagagtttaggg 316  Q
    ||||||||||||||||||||||||||||||||||    
T  8667734 tgtggaccgtcattatattcctaagagtttaggg 8667767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 17997361 - 17997307
Alignment:
Q  246 caccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    ||||| ||||||||||||||||| |||||||||||  ||||||||||||| ||||||    
T  17997361 caccatgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattc 17997307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 19573974 - 19573912
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||| ||||||||| |||||||||||  | ||| ||||||| |||||||||||    
T  19573974 aagcaccacgccttgtgccaagacttgtgcttgggggc--tatggtccgtcataatattcctaag 19573912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 22467354 - 22467395
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    ||||||||||||||||||||| |||| |||||||||| ||||    
T  22467354 aagcaccacgccttgtaccaacacttgtgcttgggggttgtg 22467395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 13809479 - 13809534
Alignment:
Q  250 acgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaa 306  Q
    ||||||||| ||||||||||||||||||||   |||||||||||| |||| ||||||    
T  13809479 acgccttgttccaagacttatgcttggggg-gctgtggaccgtcaatatactcctaa 13809534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 20091017 - 20090981
Alignment:
Q  246 caccacgccttgtaccaagacttatgcttgggggctg 282  Q
    |||||||||||| |||||||||| |||||||||||||    
T  20091017 caccacgccttgaaccaagacttgtgcttgggggctg 20090981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 7311630 - 7311327
Alignment:
Q  12 atgaaatgagaagggaagagttttccgcctctttttaagggaaaaaagtagctctctcgaaaaacgtgccgagtcggcggatcattgacacgtgggacat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||     
T  7311630 atgaaatgagaagggaagagttttccgcctctttttaagggaaaaaggtagctctctcgaaaaacgtgccgattcagcggatcgttgacacgtgggacag 7311531  T
Q  112 atcgaacgaaaaggtaacacggcatcagaacagcaaaagtcggaagatgtggaccgttggatgaaggggacatcataaacagaaccatcccgcccaaacg 211  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7311530 atcgaacgaaaaggtaacacgccatcagaacagcaaaagtcagaagttgtggatcgttggatgaaggggacatcataaacagaaccatcccgcccaaacg 7311431  T
Q  212 tattaaagcgtccagaccgcataaagaatt-taagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagt 310  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  7311430 tattaaagcgtctagaccgcataaagaattaaaagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcattatattcctaagagt 7311333  T
Q  311 ttaggg 316  Q
    ||||||    
T  7311332 ttaggg 7311327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 23696339 - 23696401
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  23696339 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 23696401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 26120923 - 26120861
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  26120923 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 26120861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 26126385 - 26126323
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  26126385 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 26126323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 7311185 - 7311125
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattccta 305  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  7311185 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattccta 7311125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 4876604 - 4876666
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||| |||| |||||||||||    
T  4876604 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccatcataatattcctaag 4876666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 23696117 - 23696176
Alignment:
Q  225 agaccgcataaagaatttaagcaccacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    ||||| |||||||| || || |||||||||||| |||||||||| |||||||||||||||    
T  23696117 agacctcataaagatttaaaacaccacgccttgcaccaagacttgtgcttgggggctgtg 23696176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 4876382 - 4876439
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    |||||||| ||||||||||||||||| |||||||||||  | ||||||||||| ||||||    
T  4876382 aagcaccatgccttgtaccaagacttgtgcttgggggc--tatggaccgtcataatattc 4876439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 9001570 - 9001630
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcct 304  Q
    |||||||||||||||||||||| ||  ||||||||||   ||||||||||||| ||||||||    
T  9001570 aagcaccacgccttgtaccaagcctcgtgcttggggg-gctgtggaccgtcataatattcct 9001630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 33 - 312
Target Start/End: Complemental strand, 11105 - 10829
Alignment:
Q  33 tttccgcctctttttaagggaaaaaagtagctctctcgaaaaacgtgccgagtcggcggatcattgacacgtgggacatatcgaacgaaaaggtaacacg 132  Q
    ||||||||||||||||||| ||||||||| |||||  |||||||||||||| || | ||||| ||||||||||||||| ||||||||||||  ||| |||    
T  11105 tttccgcctctttttaaggaaaaaaagtacctctc--gaaaaacgtgccgattcagtggatcgttgacacgtgggacagatcgaacgaaaaaataatacg 11008  T
Q  133 gcatcagaacagcaaaagtcggaagatgtggaccgttggatgaaggggacatcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgca 232  Q
     |||||||| |||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | | ||||||||||     
T  11007 ccatcagaatagcaaaagtcagaagatatggaccgttggatgaagggaacatcataaacggaaccatcccgcccaaacgtattagaacatccagaccgcg 10908  T
Q  233 taaagaatt-taagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagttt 312  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||    
T  10907 taaagaattaaaagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaagagttt 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 10684 - 10622
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    ||||| |||||||||||||||||||| || ||||||||  ||||||||||||| |||||||||||    
T  10684 aagcatcacgccttgtaccaagacttgtgattgggggc--tgtggaccgtcataatattcctaag 10622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 184 - 316
Target Start/End: Complemental strand, 15154935 - 15154804
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaatt-taagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||| |||||      
T  15154935 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaattaaaagcaccacgccttgtaccaagacttgtgcttaggggc-- 15154838  T
Q  283 tgtggaccgtcattatattcctaagagtttaggg 316  Q
    ||||||||||||||||||||||||||||||||||    
T  15154837 tgtggaccgtcattatattcctaagagtttaggg 15154804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 313
Target Start/End: Complemental strand, 19911746 - 19911616
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||   |||||||||||||||||||||| ||  ||| | ||||       
T  19911746 tcataaacagaaccatcccgcccaaacgtattaaagtgtcccgaccgcataaaaaatcaaaagcaccacgccttgtaccaagcctcgtgcattggggggc 19911647  T
Q  283 tgtggaccgtcattatattcctaagagttta 313  Q
    ||||||||||||| ||||||||||| |||||    
T  19911646 tgtggaccgtcataatattcctaagggttta 19911616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 19751340 - 19751401
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaa 306  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||||    
T  19751340 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaa 19751401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 15142954 - 15142894
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattccta 305  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  15142954 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattccta 15142894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 15154663 - 15154603
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattccta 305  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||    
T  15154663 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattccta 15154603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 12020538 - 12020476
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| | |||||||||    
T  12020538 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataaaattcctaag 12020476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 19751563 - 19751625
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    ||||||||| |||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  19751563 aagcaccacaccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 19751625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 20435544 - 20435482
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    ||||||| |||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  20435544 aagcaccgcgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 20435482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 24277142 - 24277080
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||| ||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  24277142 aagcaccacgccttgtgccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 24277080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 20435755 - 20435686
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtttag 314  Q
    |||||||||||||||||||||||||| |||||||| ||  ||||||||||||| ||||||| ||||| ||||    
T  20435755 aagcaccacgccttgtaccaagacttgtgcttgggagc--tgtggaccgtcataatattccgaagagcttag 20435686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 20435933 - 20435823
Alignment:
Q  66 tctcgaaaaacgtgccgagtcggcggatcattgacacgtgggacatatcgaacgaaaaggtaacacggcatcagaacagcaaaagtcggaagatgtggac 165  Q
    ||||| ||||||||| || || ||||||||   |||||||  ||| |||||| ||| ||||| |||| ||| ||||  ||||| ||||||||||||||||    
T  20435933 tctcggaaaacgtgcggattcagcggatcaccaacacgtgtaacagatcgaatgaagaggtagcacgccattagaaacgcaaaggtcggaagatgtggac 20435834  T
Q  166 cgttggatgaa 176  Q
    |||||||||||    
T  20435833 cgttggatgaa 20435823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 20514188 - 20514250
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||| ||||| ||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  20514188 aagcaccacgtcttgtgccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 20514250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 24277365 - 24277308
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    |||||||||||||||||||||||||  |||||||||||  |||||||||| |||||||||    
T  24277365 aagcaccacgccttgtaccaagactcgtgcttgggggc--tgtggaccgttattatattc 24277308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 24277653 - 24277597
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    |||||||||||||||||||||||||| |||||||||    ||||||||||||| ||||||    
T  24277653 aagcaccacgccttgtaccaagacttgtgcttgggg---ctgtggaccgtcataatattc 24277597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 725750 - 725880
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||| |||||||||||      
T  725750 tcataaacagaaccatcccgcccaaacgtattaaagcgtcccgaccgcataaagaatcaaaagcaccacgccttgtaccaagacttgtgcttgggggc-- 725847  T
Q  283 tgtggaccgtcattatattcct-aagagtttag 314  Q
    |||||||||||||||||||||| ||||||||||    
T  725848 tgtggaccgtcattatattcctaaagagtttag 725880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 23881951 - 23882013
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  23881951 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 23882013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 27788868 - 27788930
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  |||| |||||||| |||||||||||    
T  27788868 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtgaaccgtcataatattcctaag 27788930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 10757061 - 10757122
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaa 306  Q
    |||||||| ||||||||||||||||| |||||||||||  ||||||||||||| ||||||||||    
T  10757061 aagcaccatgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaa 10757122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 10970232 - 10970293
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaa 306  Q
    |||||||| ||||||||||||||||| |||||||||||  ||||||||||||| ||||||||||    
T  10970232 aagcaccatgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaa 10970293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 23882177 - 23882238
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaa 306  Q
    |||||||||||||||||||||||||| |||||||||||  || |||||||||| ||||||||||    
T  23882177 aagcaccacgccttgtaccaagacttgtgcttgggggc--tggggaccgtcataatattcctaa 23882238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 27788646 - 27788687
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  27788646 aagcaccacgccttgtaccaagacttgtgcttgggggctgtg 27788687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 23881750 - 23881788
Alignment:
Q  246 caccacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  23881750 caccacgccttgtaccaagacttgtgcttgggggctgtg 23881788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 20009435 - 20009314
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||      
T  20009435 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaatcaaaagcaccacgccttgtaccaagacttgtgcttgggggc-- 20009338  T
Q  283 tgtggaccgtcattatattcctaa 306  Q
    ||||| ||||||||||||||||||    
T  20009337 tgtgggccgtcattatattcctaa 20009314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 19777776 - 19777654
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||| ||  |||||||||| |     
T  19777776 tcataatcagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaatcaaaagcaccacgccttgttccaagcctcgtgcttggggggt- 19777678  T
Q  283 tgtggaccgtcattatattcctaa 306  Q
    ||||||||||||| | ||||||||    
T  19777677 tgtggaccgtcataaaattcctaa 19777654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 26901100 - 26901029
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtttaggg 316  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||    
T  26901100 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcattatattcctaagagtttaggg 26901029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 19803625 - 19803505
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||   |||||||||||||||||||||| ||   |||||||||       
T  19803625 tcataaacagaaccatcccgcccaaacattttaaagcgtcccgaccgcataaagaatcaaaagcaccacgccttgtaccaagcctcgcgcttggggg-gc 19803527  T
Q  283 tgtggaccgtcattatattcct 304  Q
    ||||||||||||| ||||||||    
T  19803526 tgtggaccgtcataatattcct 19803505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 18560086 - 18560157
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtttaggg 316  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||    
T  18560086 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcattatattcctaagagcttaggg 18560157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 8854374 - 8854312
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  8854374 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 8854312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 26900888 - 26900826
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  26900888 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 26900826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 95076 - 95019
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  95076 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcattatattc 95019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 10774262 - 10774193
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtttag 314  Q
    |||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||||||| | |||||||    
T  10774262 aagcaccacgccttgtaccaagacttgtgctttggggc--tgtggaccgtcattatattcctcaaagtttag 10774193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 17601509 - 17601568
Alignment:
Q  246 caccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  17601509 caccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 17601568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 94854 - 94792
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    ||||||||||||||||||||||| || |||||||||||  ||||||||||||| |||||||||||    
T  94854 aagcaccacgccttgtaccaagatttgtgcttgggggc--tgtggaccgtcataatattcctaag 94792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 8854544 - 8854482
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| || ||||||||  ||||||||||||| |||||||||||    
T  8854544 aagcaccacgccttgtaccaagacttgtggttgggggc--tgtggaccgtcataatattcctaag 8854482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 14561386 - 14561325
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaa 306  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||  ||||||||||    
T  14561386 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcacaatattcctaa 14561325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 10813535 - 10813494
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  10813535 aagcaccacgccttgtaccaagacttgtgcttgggggctgtg 10813494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 16091452 - 16091511
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcct 304  Q
    |||||||||||||||| ||||||||| |||||||||||  | ||||||||||| ||||||||    
T  16091452 aagcaccacgccttgtgccaagacttgtgcttgggggc--tatggaccgtcataatattcct 16091511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 10813314 - 10813277
Alignment:
Q  247 accacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10813314 accacgccttgtaccaagacttgtgcttgggggctgtg 10813277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 16091656 - 16091718
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||| ||||| ||||||||| |||||||||||  | ||||||||||| |||||||||||    
T  16091656 aagcaccacgtcttgtgccaagacttgtgcttgggggc--tatggaccgtcataatattcctaag 16091718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 12207010 - 12206950
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgg-gggctgtgtggaccgtcattatattcct 304  Q
    |||||||||||||||| |||||||| |||||||| ||||  ||||||||||||| ||||||||    
T  12207010 aagcaccacgccttgttccaagactcatgcttggtgggc--tgtggaccgtcataatattcct 12206950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 306
Target Start/End: Original strand, 2692330 - 2692443
Alignment:
Q  193 gaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaatttaa-gcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccg 291  Q
    ||||||||||||||||| |||| |||   |||||| ||| |  |||||| || |||||||||||||| ||||| ||  ||||||||||   |||||||||    
T  2692330 gaaccatcccgcccaaatgtatcaaattatccagatcgcctttagaattaaaagcaccacgccttgttccaagcctcgtgcttggggg-gctgtggaccg 2692428  T
Q  292 tcattatattcctaa 306  Q
    |||| ||||||||||    
T  2692429 tcataatattcctaa 2692443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 5195020 - 5195081
Alignment:
Q  116 aacgaaaaggtaacacggcatcagaacagcaaaagtcggaagatgtggaccgttggatgaag 177  Q
    ||||||||||| ||||| |||| ||| || ||| ||||||| || |||||||||||||||||    
T  5195020 aacgaaaaggtcacacgccatcggaatagaaaaggtcggaaaatatggaccgttggatgaag 5195081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 20009182 - 20009113
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgg-gggctgtgtggaccgtcattatattcctaagagttta 313  Q
    |||||||||||||||| ||||| ||  ||||||| ||||||||  ||||||||| ||||||||||| |||||    
T  20009182 aagcaccacgccttgttccaagcctcgtgcttggagggctgtg--gaccgtcataatattcctaagggttta 20009113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 184 - 314
Target Start/End: Original strand, 18977049 - 18977179
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||      
T  18977049 tcataaacagaaccgtcccgcccaaacgtattaaagcgtccagaccgcataaagaatcaaaagcaccacgccttgtaccaagacttgtgcttgggggc-- 18977146  T
Q  283 tgtggaccgtcattatattcct-aagagtttag 314  Q
    | |||||||||||||||||||| ||||||||||    
T  18977147 tatggaccgtcattatattcctaaagagtttag 18977179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 3302774 - 3302845
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtttaggg 316  Q
    |||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||    
T  3302774 aagcaccacgccttgtaccaagacttgtgcttggggg--ttgtggaccgtcattatattcctaagagtttaggg 3302845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 307
Target Start/End: Complemental strand, 26905855 - 26905731
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||   |||||||||||||||| ||||| ||  ||||||||||       
T  26905855 tcataaacagaaccatcccgcccaaacgtattaaaacgtcccgacctcataaagaatcaaaagcaccacgccttgttccaagcctcgtgcttggggg-gc 26905757  T
Q  283 tgtggaccgtcat-tatattcctaag 307  Q
    |||||||||||||  |||||||||||    
T  26905756 tgtggaccgtcataaatattcctaag 26905731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 314
Target Start/End: Original strand, 21834251 - 21834498
Alignment:
Q  66 tctcgaaaaacgtgccgagtcggcggatcattgacacgtgggacatatcgaacgaaaaggtaacacggcatcagaacagcaaaagtcggaagatgtggac 165  Q
    ||||| ||| ||||| || || ||||||| | ||||||||  ||| |||||| |||||||||||||| ||| ||||  ||||| ||||| ||||||||||    
T  21834251 tctcggaaagcgtgcagattcagcggatcttagacacgtgtaacagatcgaatgaaaaggtaacacgccattagaaatgcaaaggtcgggagatgtggac 21834350  T
Q  166 cgttggatgaaggggacatcataaacagaaccatcccgccc-aaacgtattaaagcgtcc---agaccgcataaagaatttaagcaccacgccttgtacc 261  Q
    |||||||||||  || ||||  ||| ||||||||| ||||| ||||  |||||| ||  |   ||| | | |  |||||| || ||||||||||||||||    
T  21834351 cgttggatgaaaagggcatcgcaaatagaaccatctcgcccgaaac--attaaaacgctcataagatcac-tttagaattaaaacaccacgccttgtacc 21834447  T
Q  262 aagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtttag 314  Q
    ||||||| |||||||||||  ||||||||||||| ||||||| ||||| ||||    
T  21834448 aagacttgtgcttgggggc--tgtggaccgtcataatattccgaagagcttag 21834498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 14676391 - 14676453
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  14676391 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 14676453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 21834641 - 21834703
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  21834641 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 21834703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 36281602 - 36281540
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  36281602 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 36281540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 36281773 - 36281711
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  36281773 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 36281711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 14676169 - 14676238
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaagagtttag 314  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||| ||||| ||||    
T  14676169 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattccgaagagcttag 14676238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 21408188 - 21408250
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||| ||| |||||||||||  ||||||||||||| |||||||||||    
T  21408188 aagcaccacgccttgtaccaaggcttgtgcttgggggc--tgtggaccgtcataatattcctaag 21408250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 21802680 - 21802742
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||| ||| |||||||||||  ||||||||||||| |||||||||||    
T  21802680 aagcaccacgccttgtaccaaggcttgtgcttgggggc--tgtggaccgtcataatattcctaag 21802742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 31710944 - 31711006
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||| |||| |||||||||||    
T  31710944 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccatcataatattcctaag 31711006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 3302986 - 3303043
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||    
T  3302986 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattc 3303043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 20132124 - 20132062
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||| ||||||||| |||||||||||  | ||||||||||| |||||||||||    
T  20132124 aagcaccacgccttgtgccaagacttgtgcttgggggc--tatggaccgtcataatattcctaag 20132062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 21938228 - 21938282
Alignment:
Q  246 caccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||    
T  21938228 caccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattc 21938282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 21938429 - 21938491
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| ||||| |||||  ||||||||||||| || ||||||||    
T  21938429 aagcaccacgccttgtaccaagacttgtgcttaggggc--tgtggaccgtcataatgttcctaag 21938491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 36602340 - 36602411
Alignment:
Q  233 taaagaatttaagcaccacgccttgtaccaagacttatgcttggg-ggctgtgtggaccgtcattatattccta 305  Q
    |||||| || ||||||||||||||||| |||||||| |||||||| |||  ||||||||||||| |||||||||    
T  36602340 taaagagttaaagcaccacgccttgtatcaagacttgtgcttgggtggc--tgtggaccgtcataatattccta 36602411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 14369540 - 14369602
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||| ||||| ||||||||| |||||||||||  | ||||||||||| |||||||||||    
T  14369540 aagcaccacgtcttgtgccaagacttgtgcttgggggc--tatggaccgtcataatattcctaag 14369602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 14370091 - 14370153
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||| ||||| ||||||||| |||||||||||  | ||||||||||| |||||||||||    
T  14370091 aagcaccacgtcttgtgccaagacttgtgcttgggggc--tatggaccgtcataatattcctaag 14370153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 44754002 - 44754062
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcct 304  Q
    |||||||||||||||||||||||||| ||||||||||   ||||||| ||||| ||||||||    
T  44754002 aagcaccacgccttgtaccaagacttgtgcttggggg-gctgtggactgtcataatattcct 44754062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 22191764 - 22191724
Alignment:
Q  244 agcaccacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  22191764 agcaccacgccttgtcccaagacttgtgcttgggggctgtg 22191724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 31710722 - 31710779
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    |||||||| ||||||||||||||||| |||||||||||  | ||||||||||| ||||||    
T  31710722 aagcaccatgccttgtaccaagacttgtgcttgggggc--tatggaccgtcataatattc 31710779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 17526908 - 17526849
Alignment:
Q  242 taagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    ||||||||||||||||| |||||| || ||||||||||   ||||||||||||| ||||||    
T  17526908 taagcaccacgccttgttccaagatttgtgcttggggg-gctgtggaccgtcataatattc 17526849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 184 - 314
Target Start/End: Complemental strand, 5328916 - 5328786
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||| |||||||||||      
T  5328916 tcataaacagaaccgtcccgcccaaacgtattaaagcgtccagaccgcataaagaatcaaaagcaccacgccgtgtaccaagacttgtgcttgggggc-- 5328819  T
Q  283 tgtggaccgtcattatattcct-aagagtttag 314  Q
    |||||||||||||||||||||| ||||||||||    
T  5328818 tgtggaccgtcattatattcctaaagagtttag 5328786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 15828985 - 15828865
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||   |||||||||||||||||||||| ||  ||||||||||       
T  15828985 tcataaacagaaccatcccgcccaaacattttaaagcgtcccgaccgcataaagaatcaaaagcaccacgccttgtaccaagcctcgtgcttggggg-gc 15828887  T
Q  283 tgtggaccgtcattatattcct 304  Q
    ||||||||||||| ||||||||    
T  15828886 tgtggaccgtcataatattcct 15828865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 37279211 - 37279091
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||   |||||||||||||||||||||| ||  ||||||||||       
T  37279211 tcataaacagaaccatcccgcccaaacattttaaagcgtcccgaccgcataaagaatcaaaagcaccacgccttgtaccaagcctcgtgcttggggg-gc 37279113  T
Q  283 tgtggaccgtcattatattcct 304  Q
    ||||||||||||| ||||||||    
T  37279112 tgtggaccgtcataatattcct 37279091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 23522593 - 23522531
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  23522593 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 23522531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 11544550 - 11544612
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| | |||||||||    
T  11544550 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataaaattcctaag 11544612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 23522816 - 23522759
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattc 302  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||| |||||||||    
T  23522816 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgttattatattc 23522759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 11544329 - 11544385
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatatt 301  Q
    |||||||||||||||||||||||||| |||||||||||  |||||||||| ||||||||    
T  11544329 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgttattatatt 11544385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 11099969 - 11100028
Alignment:
Q  246 caccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    ||||| ||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  11099969 caccatgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 11100028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 11527146 - 11527187
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  11527146 aagcaccacgccttgtaccaagacttgtgcttgggggctgtg 11527187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 44359944 - 44360006
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||| ||||||||| |||||||||||  | ||||||||||| |||||||||||    
T  44359944 aagcaccacgccttgtgccaagacttgtgcttgggggc--tatggaccgtcataatattcctaag 44360006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 2592054 - 2591999
Alignment:
Q  251 cgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||| ||||||||| |||||||||| | ||| |||||||| ||||||||||||    
T  2592054 cgccttgtcccaagacttgtgcttggggggt-tgtagaccgtcaatatattcctaag 2591999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 11544072 - 11544116
Alignment:
Q  12 atgaaatgagaagggaagagttttccgcctctttttaagggaaaa 56  Q
    |||||||| ||||||||||| |||||| ||||||| |||||||||    
T  11544072 atgaaatgggaagggaagaggtttccgtctcttttaaagggaaaa 11544116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 313
Target Start/End: Complemental strand, 40569961 - 40569832
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||   |||||||||||||||||||||| ||  ||||||||||       
T  40569961 tcataaacagaaccatccagcccaaacatattaaagcgtcccgaccgcataaaaaatcaaaagcaccacgccttgtaccaagcctcgtgcttggggg-gc 40569863  T
Q  283 tgtggaccgtcattatattcctaagagttta 313  Q
    ||||||||||||| ||||||||||| |||||    
T  40569862 tgtggaccgtcataatattcctaagggttta 40569832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 8459986 - 8460048
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  8459986 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 8460048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 26857751 - 26857689
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  26857751 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 26857689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 38840322 - 38840384
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  38840322 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 38840384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 38840493 - 38840555
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  38840493 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 38840555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 40936419 - 40936481
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  40936419 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 40936481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 26857974 - 26857913
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaa 306  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| ||||||||||    
T  26857974 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaa 26857913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 32965593 - 32965656
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaaga 308  Q
    ||||||||| |||||||||||||||| |||||||||||  ||||||||||||| ||||||||||||    
T  32965593 aagcaccacaccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaaga 32965656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 40936214 - 40936255
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  40936214 aagcaccacgccttgtaccaagacttgtgcttgggggctgtg 40936255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 15213168 - 15213106
Alignment:
Q  242 taagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcct 304  Q
    |||||||||| |||||| |||||||||  |||||||||   ||||||||||||| ||||||||    
T  15213168 taagcaccacaccttgttccaagacttgcgcttgggggggctgtggaccgtcataatattcct 15213106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 184 - 304
Target Start/End: Original strand, 244803 - 244923
Alignment:
Q  184 tcataaacagaaccatcccgcccaaacgtattaaagcgtccagaccgcataaagaat-ttaagcaccacgccttgtaccaagacttatgcttgggggctg 282  Q
    ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||   |||||||||||||||||||||| ||  ||||||||||       
T  244803 tcataaacagaaccatcccgcccaaacattttaaagcgtcccgaccgcataaagaatcaaaagcaccacgccttgtaccaagcctcgtgcttggggg-gc 244901  T
Q  283 tgtggaccgtcattatattcct 304  Q
    ||||||||||||| ||||||||    
T  244902 tgtggaccgtcataatattcct 244923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 1650 - 1712
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  1650 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 1712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 4062 - 4124
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  4062 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 4124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 3214 - 3152
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  3214 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 3152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 3389 - 3333
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatatt 301  Q
    |||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||    
T  3389 aagcaccacgccttgtaccaagacttgtgtttgggggc--tgtggaccgtcattatatt 3333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 20852 - 20790
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  20852 aagcaccacgccttgtaccaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 20790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 7371 - 7433
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||| ||||||| |||||||||||  ||||||||||||| |||||||||||    
T  7371 aagcaccacgccttgtactaagacttgtgcttgggggc--tgtggaccgtcataatattcctaag 7433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 11844 - 11906
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcctaag 307  Q
    |||||||||||||||||||||||||| |||||||||||  | ||||||||||| |||||||||||    
T  11844 aagcaccacgccttgtaccaagacttgtgcttgggggc--tttggaccgtcataatattcctaag 11906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 11615 - 11688
Alignment:
Q  225 agaccgcataaagaatttaagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatatt 301  Q
    ||||||||||| || || |||||||||||||||||||||||| | ||||||||||   |||||||||||||||||||    
T  11615 agaccgcataa-gatttaaagcaccacgccttgtaccaagacctgtgcttggggg--ttgtggaccgtcattatatt 11688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1555 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1555
Description:

Target: scaffold1555; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 1153 - 1224
Alignment:
Q  233 taaagaatttaagcaccacgccttgtaccaagacttatgcttggg-ggctgtgtggaccgtcattatattccta 305  Q
    |||||| || ||||||||||||||||| |||||||| |||||||| |||  ||||||||||||| |||||||||    
T  1153 taaagagttaaagcaccacgccttgtatcaagacttgtgcttgggtggc--tgtggaccgtcataatattccta 1224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 27314 - 27373
Alignment:
Q  243 aagcaccacgccttgtaccaagacttatgcttgggggctgtgtggaccgtcattatattcct 304  Q
    |||||||||||||||||||||||||| || |||||||   ||||||||||||| ||||||||    
T  27314 aagcaccacgccttgtaccaagacttgtgtttggggg--ttgtggaccgtcataatattcct 27373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 27113 - 27151
Alignment:
Q  246 caccacgccttgtaccaagacttatgcttgggggctgtg 284  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  27113 caccaagccttgtaccaagacttgtgcttgggggctgtg 27151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University