View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13469_high_30 (Length: 315)
Name: NF13469_high_30
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_30 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 499615 - 499316
Alignment:
| Q |
16 |
atctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499615 |
atctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagt |
499516 |
T |
|
| Q |
116 |
gaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499515 |
gaatctgtattcccattaaaaattaccatacgttcggcttttgcggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcga |
499416 |
T |
|
| Q |
216 |
ttaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttctgatcagttctaat |
315 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499415 |
ttaactcgtatgaccatcgaggaacttgtttactgatttcgtttattccagtacatttctttctattaaaaatggtttggttgttctgatcagttctaat |
499316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 6924363 - 6924064
Alignment:
| Q |
16 |
atctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924363 |
atctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaagtccacttcaagaatagcgtcattgtcatttctaggaccaatattcaaagtcagt |
6924264 |
T |
|
| Q |
116 |
gaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924263 |
gaatctgtattcccattaaaaattaccatacgttcggcttttgcggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcga |
6924164 |
T |
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| Q |
216 |
ttaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttctgatcagttctaat |
315 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924163 |
ttaactcgtatgaccatcgaggaacttgtttactgatttcgtttattccagtacatttctttctattaaaaatggtttggttgttctgatcagttctaat |
6924064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 88 - 315
Target Start/End: Complemental strand, 27529201 - 27528974
Alignment:
| Q |
88 |
atttctaggaccaatattcaaagtcagtgaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagt |
187 |
Q |
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|||| ||||| ||| ||||||| | |||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||| ||| | |
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| T |
27529201 |
atttttaggatcaagattcaaatttagtgaacttgtattcccattaaaaattactatacgtttggtaattggggaacgaatctgagcctcttttattatt |
27529102 |
T |
|
| Q |
188 |
ctttccgtcatttgctccaattcgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaa |
287 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
27529101 |
cttttcgtcacttgctccaattcgtcgattaactcgtatgaccatcgaggaacttgtttactgatttcgtttattccactacatttctttctataaaaaa |
27529002 |
T |
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| Q |
288 |
tggtttggttgttctgatcagttctaat |
315 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
27529001 |
tggtttggttgttccgatcagttctaat |
27528974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 36988745 - 36988872
Alignment:
| Q |
188 |
ctttccgtcatttgctccaattcgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaa |
287 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| | |||||||||| ||||||||| |||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
36988745 |
ctttccatcacttgctccaattcgtcgattaagttgtatgaccattgaggaacttgtttactgatttagtttattcagctacatttctttctattaaaaa |
36988844 |
T |
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| Q |
288 |
tggtttggttgttctgatcagttctaat |
315 |
Q |
| |
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|||||||||||||| |||||||||||| |
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| T |
36988845 |
tggtttggttgttccaatcagttctaat |
36988872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 30831787 - 30831488
Alignment:
| Q |
16 |
atctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagt |
115 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
30831787 |
atctgattcacgtaaaaaatttagtagaaaaaattcgtgattcaggtccagttcaggaatagcatcattgtcatttctaggaccaagattcaaagtcagt |
30831688 |
T |
|
| Q |
116 |
gaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcga |
215 |
Q |
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||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||| |
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| T |
30831687 |
gaatctgtattcctattaaatattaccatacgttcggcttctggggaacgaatctgagtctcttttgttagtcttttcgtcacttgctctaattcgtcga |
30831588 |
T |
|
| Q |
216 |
ttaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttctgatcagttctaat |
315 |
Q |
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|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30831587 |
ttaactcgtatgaccatcgaggaacttgtttactgatttcgtttattccactacatttctttctattaaaaatggtttggttgttccgatcagttctaat |
30831488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 47460386 - 47460500
Alignment:
| Q |
16 |
atctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460386 |
atctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagt |
47460485 |
T |
|
| Q |
116 |
gaatctgtattccca |
130 |
Q |
| |
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|| |||||||||||| |
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| T |
47460486 |
gactctgtattccca |
47460500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 53116160 - 53116048
Alignment:
| Q |
203 |
tccaattcgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttct |
302 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53116160 |
tccaattcgtcgattaagttgtatgaccatcgagaaacttggttactgattttgtttattccactacatttctttttattaaaaatggtttggttgttcc |
53116061 |
T |
|
| Q |
303 |
gatcagttctaat |
315 |
Q |
| |
|
||| |||||||| |
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|
| T |
53116060 |
gatgggttctaat |
53116048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 45 - 297
Target Start/End: Original strand, 28384101 - 28384352
Alignment:
| Q |
45 |
aaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagtgaatctgtattcccattaaaaattaccat |
144 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||| |||||||||||| || |
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| T |
28384101 |
aaaattcgtgatttaggtccagttcaggaatagcgtcattgtcatt-ctaggaccaagattcaaagttagtgaatctgtattcctattaaaaattactat |
28384199 |
T |
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| Q |
145 |
acgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcgattaactcgtatgaccatcgaggaacttct |
244 |
Q |
| |
|
|||||||||| | || ||||||| ||| |||||||| || ||||||||||| |||||||| ||| || ||||| | |||||||||| ||| ||||| | |
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| T |
28384200 |
acgttcggctcgtaggaaacgaatttgagcctcttttgataatctttccgtcacttgctccatttcatctattaagttgtatgaccattgagaaacttgt |
28384299 |
T |
|
| Q |
245 |
ttagcgatttcgtttattccactacatttctttctattaaaaatggtttggtt |
297 |
Q |
| |
|
||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28384300 |
ttactgatttcgattattccactacatttctttgtattaaaaatggtttggtt |
28384352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 110 - 315
Target Start/End: Original strand, 47448189 - 47448385
Alignment:
| Q |
110 |
gtcagtgaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaatt |
209 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
47448189 |
gtcagtgaatctgtattcccattaaaa---------cgtttggcttttggggaacgaatctgagcctcttttgttagtctttctgtcacttgctccaatt |
47448279 |
T |
|
| Q |
210 |
cgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttctgatcagt |
309 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
47448280 |
tgtcgattaactcgtatgaccatcaaggaacttgtttactgattttgtttattccactacatttctttctattaaaaatggtttggttgttccgatcagt |
47448379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 202 - 297
Target Start/End: Complemental strand, 17260328 - 17260233
Alignment:
| Q |
202 |
ctccaattcgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggtt |
297 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17260328 |
ctccaattcgtcgattaactcgtatgaccatcgaggaacttgtttactaatttcgtttattccactacatttctttctattaaaaatggtttggtt |
17260233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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