View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13469_high_31 (Length: 314)
Name: NF13469_high_31
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_31 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
| [»] scaffold0414 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 31227683 - 31227986
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31227683 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcaccgcaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
31227782 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31227783 |
agcgtgctagaaacatgcttgcagactggcaactggctaatgctccggatgttcttgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
31227882 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31227883 |
acaacaccgaatcacgtggcagcctcccgtggccggaagatacaaatgtaacatcgatgcagccttctcttctcacgtcaaccgtacaggtattggtatc |
31227982 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
31227983 |
tgtg |
31227986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 6006730 - 6006427
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6006730 |
gaattaaaacaatgtatgtcatctgtattatggagtatatggaagcaccgcaatctcagagtgtgggatgatgtaacagaaacaagtgctgcggttgtcg |
6006631 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6006630 |
agcgtgctagaaacatgcttgcagactggcaactggctaatgctccggatgttcttgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
6006531 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
6006530 |
acaacaccgaatcacgtggcagcctcccgtggccggaagatacaaatgtaacatcgatgcggccttctcttctcacgtcaaccatacaggtattggtatt |
6006431 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
6006430 |
tgtg |
6006427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 17789597 - 17789900
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17789597 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcaccgcaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
17789696 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17789697 |
agcgtgctagaaacatgcttgcatactggcaactagctaatgctccggatgttcttgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
17789796 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
|||||||| ||| |||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
17789797 |
acaacaccgaattacgtggtagcctcccttggccggaagatacaaatgtaacatcgatgcggccttctcttcccacgtcaaccgtacaggtattgttatt |
17789896 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
17789897 |
tgtg |
17789900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 19098039 - 19098342
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19098039 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcaccgcaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
19098138 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19098139 |
agcgtgctagaaacatgcttgcatactggcaactagctaatgctccggatgttcttgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
19098238 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
|||||||| ||| |||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
19098239 |
acaacaccgaattacgtggtagcctcccttggccggaagatacaaatgtaacatcgatgcggccttctcttcccacgtcaaccgtacaggtattgttatt |
19098338 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
19098339 |
tgtg |
19098342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 53436982 - 53437284
Alignment:
| Q |
2 |
aattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcga |
101 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||| ||||||||||||||| ||||||||||| ||||||| || |
|
|
| T |
53436982 |
aattaacacaacgtatgtcatctgtaatatggagtttatggaaacaccgcaatctcagagtatgggatgatgtaacacaaacaagtgccacggttgttga |
53437081 |
T |
|
| Q |
102 |
gcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctcaa |
201 |
Q |
| |
|
||||||| | |||||| ||| |||||||||| ||||||||||||||||| ||| ||| ||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
53437082 |
gcgtgctcggaacatggttgaagattggcaattggctaatgctccggatattcttgtgtctagctcgacacatcaacctccaacggcctccacctctcct |
53437181 |
T |
|
| Q |
202 |
caacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatct |
301 |
Q |
| |
|
||||| | ||||| ||||||||||||||| |||||||||||||| || ||| | ||||| |||||||||| | |||| ||||||||||||||||| | |
|
|
| T |
53437182 |
caacatcgaatcatgtggcagcctctcgtactaggaagatacaaatgcaatatcgacgcggctttctcttctcacatcaatcgtacaggtattggtattt |
53437281 |
T |
|
| Q |
302 |
gtg |
304 |
Q |
| |
|
||| |
|
|
| T |
53437282 |
gtg |
53437284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 31808640 - 31808740
Alignment:
| Q |
52 |
aatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatg |
151 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||||||||| | |||||| ||||| ||| |||||||| || | |||| |||| |||| ||| ||||||||| |
|
|
| T |
31808640 |
aatcttagagtttgggacgatgttacagaaacaagtgcggtggttgtagagcgagctcgaaacatgattacggattagcaattggcgaattctccggatg |
31808739 |
T |
|
| Q |
152 |
t |
152 |
Q |
| |
|
| |
|
|
| T |
31808740 |
t |
31808740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 49642102 - 49642188
Alignment:
| Q |
55 |
ctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgctagaaacatgcttgcagattggcaactggctaat |
141 |
Q |
| |
|
|||||||| |||||| |||| |||||||| ||||| |||| || |||||||||||||| ||| | | |||||||||||||||||| |
|
|
| T |
49642102 |
ctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggtcgttgattggcaactggctaat |
49642188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 30858808 - 30859111
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30858808 |
gaattaaaacaacatatgtcatctgtattatggagtatatggaagcaccgcaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
30858907 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30858908 |
agcgtgctagaaacatgcttgcagactggcaactggctaatgctccggatgttcttgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
30859007 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30859008 |
acaacatcgaatcacgtggcagcctcccgtggccggaagatacaaatgtaacatcgatgcggccttctcttctcacgtcaaccgtacaggtattggtatt |
30859107 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
30859108 |
tgtg |
30859111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 55227057 - 55227360
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55227057 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcaccgcaatctctgagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
55227156 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55227157 |
agcgtgctagaaacatgcttgcagactggcaattggctaatgctccggatgttcttgtatctagatcgaatcatcaaccaacaacgacctccacctctca |
55227256 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
55227257 |
acaacaccaaatcacatggcagcctcccgtgtccggaagatacaaatgtaacatcgatgcggtcttctcttctcacgtcaactgtacaggtattggtatt |
55227356 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
55227357 |
tgtg |
55227360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 159 - 304
Target Start/End: Complemental strand, 30191484 - 30191339
Alignment:
| Q |
159 |
atctagatcgaatcatcaaccaacaacggcctccacctctcaacaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaat |
258 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
30191484 |
atctagatcaaatcatcaaccaacaacggcctccacctctcaacaacaccgaatcacgtggcagcctcatgtggccggaagatacaaatgtaacattgat |
30191385 |
T |
|
| Q |
259 |
gcggccttctcttctcccgtcaaccgtacaggtattggtatctgtg |
304 |
Q |
| |
|
||||||||| |||||| ||||||| ||||| |||||||||| |||| |
|
|
| T |
30191384 |
gcggccttcacttctcacgtcaactgtacatgtattggtatttgtg |
30191339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 14263516 - 14263573
Alignment:
| Q |
51 |
caatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgct |
108 |
Q |
| |
|
||||||| | || ||||| |||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
14263516 |
caatctccgtgtatgggaagatgtaactgaaacaagtgccgtcgttgtcgagcgtgct |
14263573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 22291824 - 22292127
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22291824 |
gaattaaaacaacgtatgtcatctgtattatggagtatatggaaccaccgtaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
22291923 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22291924 |
agcgtgctagaaacatgcttgcagactggcaactggctaatgctccggatgttcttgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
22292023 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
22292024 |
acaacaccgaatcacgtggcagcctcctgtggccggaagatacaaatgtaacatcgatgcggccttctcttctcacgacaaccgtacaggtattggtatt |
22292123 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
22292124 |
tgtg |
22292127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 28245702 - 28246005
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
28245702 |
gaattaacacaacgtctgtcatctgtattatggattatatggaagcaccgcaatctcagagtgtgggatgatgtaagagaaacaagtgccacggttgtcg |
28245801 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28245802 |
agcgtgctagaaacatgcttgcagactagcaactagctaatgctccagatgttcttgaatctagatcgaatcatcaaccaacaacgacctccacctctca |
28245901 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
28245902 |
acaacaccgaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcgatgcagccttctcgtctaacgtcaaccgtacaagtattggtatt |
28246001 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
28246002 |
tgtg |
28246005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 18759164 - 18759465
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
18759164 |
gaattaacacaacgtttgtcatctgtaatatggagcatatggaagcaccacaatctcagagtgtgggatgatgtaacagaaacaagtgccacagttgtcg |
18759263 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
|||||||||| |||||| ||||||| |||| ||||||||||||||| || |||| || ||||| ||| ||| |||| ||||| | | |||||||||| |
|
|
| T |
18759264 |
agcgtgctaggaacatggttgcagactggc-actggctaatgctccagacgttcttgcttctagttcgtctcaataacccacaaccg-caccacctctca |
18759361 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||| | || |||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
18759362 |
tcaacaacgaatcacgtggcagcctcatgtggccgtaagatacaaatgtaatatcgacgcaaccttctcttctcacatcaaccgtacagatattggtatt |
18759461 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
18759462 |
tgtg |
18759465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 21091648 - 21091896
Alignment:
| Q |
3 |
attaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgag |
102 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |||||| |||||| | ||||||| |
|
|
| T |
21091648 |
attaacacaaagtctgtcatctgtattatggagtatatggaagcaccgcaatctccgagtgtgggatgatgcaatagaaacgagtgccacaattgtcgaa |
21091747 |
T |
|
| Q |
103 |
cgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctcaac |
202 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| || |||||| ||||||| || |||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
21091748 |
cgtgctagaaacatggttgcagactggcaactagcaaatgctttagatgttcttgcatctagatcgcatcatcaacccacaacggcctccacctctcaac |
21091847 |
T |
|
| Q |
203 |
aacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaa |
251 |
Q |
| |
|
|||| |||||||||||||| |||| |||| ||| |||||||||||||| |
|
|
| T |
21091848 |
aacagcaaatcacgtggcaacctcatgtggtcgggagatacaaatgtaa |
21091896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 16084535 - 16084649
Alignment:
| Q |
38 |
tatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgctagaaacatgcttgcagattggcaactggc |
137 |
Q |
| |
|
||||||| ||| |||||| ||||| ||||| ||||| ||||||| |||| | | |||||| ||||||||||| |||||| || || |||||||| |||| |
|
|
| T |
16084535 |
tatggaaacaccgcaatcttagagtttgggacgatgttacagaaagaagtccggtggttgtagagcgtgctaggaacatgattacatattggcaattggc |
16084634 |
T |
|
| Q |
138 |
taatgctccggatgt |
152 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
16084635 |
gaatgctccagatgt |
16084649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 14505166 - 14505469
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14505166 |
gaattaaaacaacgtatgtcatctgtattatggagtatatggaaacaccgtaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
14505265 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14505266 |
agcgtgctagaaacatgcttgcagactggcaactggctaatgctccggatgttcttgtatctagatcgaatcatcaaccaacaacgacctccacctctca |
14505365 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
14505366 |
acaacaccgaatcacgtggcagcctcctgtggccggaagatacaaatgtaacatcgatgcggccttctcttctcacatcaaccgtacaggtattggtatt |
14505465 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
14505466 |
tgtg |
14505469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 37590731 - 37590429
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37590731 |
gaattaacacaacgtctgtcgtctgtattatggagtatatggaagcaccacaatctcagagtatgggatgatgtaacagaaacaagtgccacggttgtcg |
37590632 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37590631 |
agcgtgctagaaacatgcttgcagactggcaactggataatgctccg-atgttcttgcatctagatcgaatcatcaaccaacaacggcctccacctctca |
37590533 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37590532 |
acaacactgaatcacgtggcagcctcccggggccggaagatacaaatgtaacatcgatgcggccttctcttctcacgtcaaccgtacaggtattggtatt |
37590433 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
37590432 |
tgtg |
37590429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 15991105 - 15990802
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
15991105 |
gaattaaaacaacgtatgccatctgtattatggagtatatggaagcaccgcaatctcagagtgtgggatgatgtaacagaaacaagtgcaacggttgttg |
15991006 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
200 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15991005 |
agcgtgctagaaacatgcttacagactggcaactggccaatgctccagatgttcttgtatctagatcgaatcatcaaccaacaacggcctccacctctca |
15990906 |
T |
|
| Q |
201 |
acaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattggtatc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
15990905 |
acaacaccgaatcacgtggcagcctcccgtgtccggaagatacaaatgtaacatcgatgcggccttctcttctcacgtcaaccgtacatgtattggtatt |
15990806 |
T |
|
| Q |
301 |
tgtg |
304 |
Q |
| |
|
|||| |
|
|
| T |
15990805 |
tgtg |
15990802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 4517844 - 4517934
Alignment:
| Q |
64 |
tgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgctagaaacatgcttgcagattggcaactggctaatgctccggatgttc |
154 |
Q |
| |
|
||||| ||||| |||||||||||||| | |||||| || || ||| |||| ||| || | ||||||||| |||| ||| |||||||||||| |
|
|
| T |
4517844 |
tgggacgatgttacagaaacaagtgcggtggttgtagatcgagctcgaaatatggttacggattggcaattggcgaattctccggatgttc |
4517934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 32479658 - 32479955
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||||||| |
|
|
| T |
32479658 |
gaattaacacaacgtctgtcatctgtattatggagtatatggaagcaccgcaatctcagagtgtggaatgatgtaacagaaacaagtaccacggttgtcg |
32479757 |
T |
|
| Q |
101 |
agcgtgctagaaacat--gcttgcagattggcaactggctaatgctccggatgttcatgtatctagatcgaatcatcaaccaacaacggcctccacctct |
198 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32479758 |
agcgtgctagaaacatacgcttgcagactggcatctggctaatgctctggatgttcttgcatctagatcgaatcatcaaccaacaacggcctccgcctct |
32479857 |
T |
|
| Q |
199 |
caacaacaccaaatcacgtggcagcctctcgtggccggaagatacaaatgtaacatcaatgcggccttctcttctcccgtcaaccgtacaggtattgg |
296 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
32479858 |
caacaacaccgaatcacgtgacagcctcccgtggccgaaagatacaaatgtaacatcgatgcggccttctcttctcacgtcaactgtacatgtattgg |
32479955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 3895930 - 3896054
Alignment:
| Q |
20 |
catctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgctagaaacatgct |
119 |
Q |
| |
|
|||||||| ||||||| ||||||| ||| ||||||||| ||| ||||| ||| | ||||||| ||||||| ||||||||||||||||| | || ||| | |
|
|
| T |
3895930 |
catctgtaatatggagcctatggaaacaccacaatctcaaagtatgggaggattttacagaaa-aagtgccacggttgtcgagcgtgctcggaatatggt |
3896028 |
T |
|
| Q |
120 |
tgcagattggcaactggctaatgctc |
145 |
Q |
| |
|
|| |||||||||||| || ||||||| |
|
|
| T |
3896029 |
tgaagattggcaactagcgaatgctc |
3896054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 3205819 - 3205719
Alignment:
| Q |
7 |
acacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtg |
106 |
Q |
| |
|
||||||||| |||||||||| || |||||| ||||||| ||| ||||| | ||||| ||||| |||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
3205819 |
acacaacgtctgtcatctgttttgtggagtttatggaaacaccacaatttgagagtatgggagaatgttacagaaacaagtgccacggtggtcgagcgtg |
3205720 |
T |
|
| Q |
107 |
c |
107 |
Q |
| |
|
| |
|
|
| T |
3205719 |
c |
3205719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 41600898 - 41601011
Alignment:
| Q |
38 |
tatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgctagaaacatgcttgcagattggcaactggc |
137 |
Q |
| |
|
||||||| |||| |||||| ||||| ||||| ||||| ||| ||||||||| | |||||| |||||||| || |||||| || ||||||||||| ||| |
|
|
| T |
41600898 |
tatggaaacactgcaatcttagagtttgggacgatgttacaaaaacaagtgatgtggttgtagagcgtgccaggaacatgattacagattggcaataggc |
41600997 |
T |
|
| Q |
138 |
taatgctccggatg |
151 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
41600998 |
gaatgctccagatg |
41601011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 17239331 - 17239245
Alignment:
| Q |
55 |
ctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgctagaaacatgcttgcagattggcaactggctaat |
141 |
Q |
| |
|
|||||||| |||||| |||| |||||||| ||||| |||| || |||||||||||||| ||| | | |||||||||||||||||| |
|
|
| T |
17239331 |
ctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggtcgttgattggcaactggctaat |
17239245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 16886732 - 16886877
Alignment:
| Q |
1 |
gaattaacacaacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcg |
100 |
Q |
| |
|
|||||||| ||| || ||||| |||| |||| || |||||||| ||| ||||||||||| ||||||||||||||| ||| ||||||| | ||| | | |
|
|
| T |
16886732 |
gaattaacgcaaagtctgtcaattgtaatatgaagcatatggaaacaccgtaatctcagagtttgggatgatgtaacaaaaaaaagtgccacagttatag |
16886831 |
T |
|
| Q |
101 |
agcgtgctagaaacatgcttgcagattggcaactggctaatgctcc |
146 |
Q |
| |
|
||||||||| |||||| ||| ||| |||||| ||||||||||||| |
|
|
| T |
16886832 |
agcgtgctaagaacatggttggagactggcaattggctaatgctcc |
16886877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 9958663 - 9958805
Alignment:
| Q |
10 |
caacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgcta |
109 |
Q |
| |
|
|||||| ||||| |||| ||||||| ||||||| |||| ||||| ||||| | ||| ||||| ||||||||||||| | |||||| |||||||||| |
|
|
| T |
9958663 |
caacgtctgtcaactgtcatatggagcttatggaaacactgtaatcttagagtttaggacgatgttacagaaacaagtgttgtggttgtagagcgtgcta |
9958762 |
T |
|
| Q |
110 |
gaaacatgcttgcagattggcaactggctaatgctccggatgt |
152 |
Q |
| |
|
| |||||| || | ||||||||||| || ||| |||||||||| |
|
|
| T |
9958763 |
ggaacatgattacggattggcaactagcgaattctccggatgt |
9958805 |
T |
|
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 24082857 - 24082948
Alignment:
| Q |
55 |
ctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgctagaaacatgcttgcagattggcaactggctaatgctcc |
146 |
Q |
| |
|
|||||||| |||||| |||| |||||||| ||||| |||| || |||||||||||||| ||| ||| |||||||||||||||||| |||| |
|
|
| T |
24082857 |
ctcagagtttgggataatgtcacagaaaccagtgcaacggtagtggagcgtgctagaaatatggttgttgattggcaactggctaatactcc |
24082948 |
T |
|
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 21703470 - 21703348
Alignment:
| Q |
10 |
caacgtatgtcatctgtattatggagtatatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgcta |
109 |
Q |
| |
|
|||||| ||||| |||| | |||||| |||||| ||| |||||| ||||| || || ||||| ||||||||||||| | |||||| |||||||||| |
|
|
| T |
21703470 |
caacgtctgtcaactgtcatgtggagttgatggaaacaccgcaatcttagagtttgtgacgatgttacagaaacaagtgatgtggttgtagagcgtgcta |
21703371 |
T |
|
| Q |
110 |
gaaacatgcttgcagattggcaa |
132 |
Q |
| |
|
| |||||| || |||||| |||| |
|
|
| T |
21703370 |
ggaacatgattacagattcgcaa |
21703348 |
T |
|
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Target: scaffold0252 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 7383 - 7497
Alignment:
| Q |
38 |
tatggaagcactacaatctcagagtgtgggatgatgtaacagaaacaagtgccgcggttgtcgagcgtgctagaaacatgcttgcagattggcaactggc |
137 |
Q |
| |
|
||||||| ||| ||||||| ||||| ||||| |||| | |||||||||||| | |||||| ||||| ||| |||||||| || | |||||||| |||| |
|
|
| T |
7383 |
tatggaaacaccacaatcttagagtttgggacgatgctatagaaacaagtgcggtggttgtagagcgagcttgaaacatgattacggattggcatttggc |
7482 |
T |
|
| Q |
138 |
taatgctccggatgt |
152 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
7483 |
gaattctccggatgt |
7497 |
T |
|
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Target: scaffold0414 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0414
Description:
Target: scaffold0414; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 9873 - 9804
Alignment:
| Q |
79 |
gaaacaagtgccgcggttgtcgagcgtgctagaaacatgcttgcagattggcaactggctaatgctccgg |
148 |
Q |
| |
|
||||||||||| | |||||| ||||||||||| |||||| || || |||||||| |||| || ||||||| |
|
|
| T |
9873 |
gaaacaagtgctgtggttgtagagcgtgctaggaacatggttacatattggcaattggcgaacgctccgg |
9804 |
T |
|
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