View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13469_high_32 (Length: 313)
Name: NF13469_high_32
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 43629603 - 43629794
Alignment:
| Q |
1 |
atggcgacattgaagacgaggtgacaatgaatttgccatgaaaactaagctgaggaagatgaagaagatttggaaaagcttgtgaagttccttcttttga |
100 |
Q |
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| T |
43629603 |
atggcgacattgaagacgaggtgacattgaatttgccatgaaaactaagctgaggaagatgaagaagatttggaaaagcttgtgaagttccttcttttga |
43629702 |
T |
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| Q |
101 |
aggtctatggcacgtttcttctcgagggttttctcgaaatggagctggatgattgtgttcaatgcttggaaagctgtttcacgagaaactac |
192 |
Q |
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| T |
43629703 |
aggtctatggcacgtttcttctcgagggttttctcgaaatggagctggatgattgtgttcaatgcttggaaagctgtttcacgagaaactac |
43629794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 43629819 - 43629856
Alignment:
| Q |
211 |
atggtggtggttttcatagtccgccatggttaacggtc |
248 |
Q |
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| T |
43629819 |
atggtggtggttttcatagtccgccatggttaacggtc |
43629856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 43629891 - 43629927
Alignment:
| Q |
267 |
tgttgtagtagctgtactgtggtgtgtcttgtctgtg |
303 |
Q |
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| T |
43629891 |
tgttgtagtagctgtactgtggtgtgtcttgtctgtg |
43629927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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