View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13469_high_33 (Length: 309)
Name: NF13469_high_33
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_33 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 86 - 309
Target Start/End: Original strand, 6855188 - 6855410
Alignment:
| Q |
86 |
tcagtttctacgtgtcattgttcatgttattttatgtgttatttgacccatttcttgtttaaagaataaaaggttggtattaatttttcgttacagaaat |
185 |
Q |
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| T |
6855188 |
tcagtttctacgtgtcacggttcatgttgttttatatgttatttgacccatttcttgtttaaagaataaaaggttggtattaatttt-cgttacagaaat |
6855286 |
T |
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| Q |
186 |
cccgacaaatgactagagagtgcaaagtctcgtctttacaaaattgacttttaagatgtgtacaatttgattagtgatttaagtcgatagattttaatat |
285 |
Q |
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| T |
6855287 |
cccgacccatgattagagagtgcaaagtctcgtctttacaaaattgacttttaagatgtgtacaatttaatcagtgatttgagtcgatagattttaatat |
6855386 |
T |
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| Q |
286 |
attaagtttttatatcgattctag |
309 |
Q |
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| T |
6855387 |
attaagtttttatatcgattctag |
6855410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 6855115 - 6855164
Alignment:
| Q |
13 |
aatatcttacactataatacaacaccgacgtttataattacattcaataa |
62 |
Q |
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| T |
6855115 |
aatatcttaccctataatacaacaccgacgtttataattacattcaataa |
6855164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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