View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13469_high_4 (Length: 505)

Name: NF13469_high_4
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13469_high_4
NF13469_high_4
[»] chr8 (1 HSPs)
chr8 (1-38)||(36999937-36999974)
[»] chr7 (1 HSPs)
chr7 (31-68)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (31-68)||(796698-796735)
chr6 (31-68)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (31-68)||(19944036-19944073)
[»] chr4 (1 HSPs)
chr4 (1-53)||(20706182-20706233)


Alignment Details
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  1 ggttgctccatataaatctcctcttccaaatctccatg 38  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  31 tctccatgaagaaatgcagttttcacatccaactgctc 68  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  31 tctccatgaagaaatgcagttttcacatccaactgctc 68  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  31 tctccatgaagaaatgcagttttcacatccaactgctc 68  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  31 tctccatgaagaaatgcagttttcacatccaactgctc 68  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20706233 - 20706182
Alignment:
Q  1 ggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 53  Q
    ||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706233 ggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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