View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13469_high_5 (Length: 478)
Name: NF13469_high_5
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 30 - 468
Target Start/End: Original strand, 47116736 - 47117170
Alignment:
| Q |
30 |
aatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatacccttgttatttcatttccttatgatatctcnnnnnnnctga |
129 |
Q |
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| T |
47116736 |
aatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatacccttgttatttcatttccttatgatatctctttttttctga |
47116835 |
T |
|
| Q |
130 |
cattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaag |
229 |
Q |
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| T |
47116836 |
cattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaag |
47116935 |
T |
|
| Q |
230 |
gagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaacgtatcaatgactcgatcgatcaccttttaacgattattttt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47116936 |
gagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaacgtatcaatgac----tcgatcaccttttaacgattattttt |
47117031 |
T |
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| Q |
330 |
aatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatcaccatcttcgccggtgatgatgtcgcc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
47117032 |
aatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatcaccgtcttcaccggtgatgatgtcgcc |
47117131 |
T |
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| Q |
430 |
attgaaccgacatgctcgtgcaggttccacaggttctgc |
468 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
47117132 |
attgaatcgacatgctcgtgcaggttccacaggttctgc |
47117170 |
T |
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