View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13469_high_6 (Length: 477)
Name: NF13469_high_6
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13469_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 188 - 425
Target Start/End: Complemental strand, 33795232 - 33795000
Alignment:
| Q |
188 |
tggttctattttaagtgaattccctatattgtcattagaagccatatagcatataggtaactaagaaaatgggtcttgaaatgttagaagagtttcgacc |
287 |
Q |
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| T |
33795232 |
tggttctattttaagttaattccctctattgttattagaagccatatagc-------taactaagaaaatgggtcttgaaatgttagaagagtttcgacc |
33795140 |
T |
|
| Q |
288 |
aattactcccataagaaccattgctcttatgactaaaacattgaaacatgtattcgaggtagag--aacagagaaagttctaaaagaggatgaacaagag |
385 |
Q |
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| T |
33795139 |
aattactcccataagaaccattgctcttatgactaaaacattgaaacatgtatccgaggtagagacaacagagaaagttctaaaagaggatgaacaagag |
33795040 |
T |
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| Q |
386 |
tgtcaaacaccaacttcatcacgaggtcaaattgtaggca |
425 |
Q |
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| T |
33795039 |
tgtcaaacaccaacttcatcacgaggtcaaattgtaggca |
33795000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 33799134 - 33799084
Alignment:
| Q |
30 |
cctttgttgcattcatccttcaatcatcaagatccattgttcctcaacaac |
80 |
Q |
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| T |
33799134 |
cctttgttgcattcatccttcaatcatcaagatccattgttcctcaacaac |
33799084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 33795299 - 33795254
Alignment:
| Q |
134 |
taccaaattaaatttaaccctttttgctttctttcaatatcatcat |
179 |
Q |
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| T |
33795299 |
taccaaattaaattcaaccctttttgctttctttcaatatcatcat |
33795254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 240 - 416
Target Start/End: Original strand, 16780307 - 16780485
Alignment:
| Q |
240 |
ataggtaactaagaaaatgggtcttgaaatgttagaagagtttcgaccaattactcccataagaaccattgctcttatgactaaaacattgaaacatgta |
339 |
Q |
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|||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16780307 |
atagctaaccaagaagatgggtcttgaaatgttagaagagtttctaccaattactcccataagaaccattgctcctatgactaaaacattgaaacatgta |
16780406 |
T |
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| Q |
340 |
ttcgaggtagag--aacagagaaagttctaaaagaggatgaacaagagtgtcaaacaccaacttcatcacgaggtcaaa |
416 |
Q |
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| T |
16780407 |
tccgaggtagagacaacaaagaaggttctaagagagaatgaacaagagtgtcacacaccaacttcatcacgaggtcaaa |
16780485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 10367701 - 10367742
Alignment:
| Q |
39 |
cattcatccttcaatcatcaagatccattgttcctcaacaac |
80 |
Q |
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| T |
10367701 |
cattcattcttcaatcatcaagactcattgttcctcaacaac |
10367742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 37868695 - 37868655
Alignment:
| Q |
39 |
cattcatccttcaatcatcaagatccattgttcctcaacaa |
79 |
Q |
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| T |
37868695 |
cattcattcttcaatcatcaagactcattgttcctcaacaa |
37868655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 52980398 - 52980456
Alignment:
| Q |
22 |
catcatcacctttgttgcattcatccttcaatcatcaagatccattgttcctcaacaac |
80 |
Q |
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| T |
52980398 |
catcatcatctttgtttcattcatccttcaattatcaagacccattgttcctcaacaac |
52980456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 39591990 - 39591932
Alignment:
| Q |
22 |
catcatcacctttgttgcattcatccttcaatcatcaagatccattgttcctcaacaac |
80 |
Q |
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| T |
39591990 |
catcatcatctttgtttcattcatccttcaattatcaagactcattgttcctcaacaac |
39591932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 35788209 - 35788272
Alignment:
| Q |
24 |
tcatcacctttgttgcattcatccttcaatcatcaagatccattgttcctcaacaacctagaat |
87 |
Q |
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| T |
35788209 |
tcatcatctttctttcattcattcttcaatcatcaagactcattgctcctcaacaacctagaat |
35788272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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