View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13469_high_7 (Length: 462)

Name: NF13469_high_7
Description: NF13469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13469_high_7
NF13469_high_7
[»] chr4 (8 HSPs)
chr4 (161-462)||(18343384-18343685)
chr4 (70-153)||(18343719-18343802)
chr4 (28-82)||(18343824-18343878)
chr4 (192-241)||(506506-506555)
chr4 (192-241)||(18042075-18042124)
chr4 (168-323)||(50593542-50593696)
chr4 (47-82)||(36639055-36639090)
chr4 (191-229)||(18179696-18179734)
[»] scaffold0002 (6 HSPs)
scaffold0002 (161-462)||(163684-163985)
scaffold0002 (185-459)||(278106-278382)
scaffold0002 (28-82)||(163465-163519)
scaffold0002 (190-232)||(190645-190687)
scaffold0002 (71-118)||(163542-163589)
scaffold0002 (118-153)||(163610-163645)
[»] scaffold0702 (1 HSPs)
scaffold0702 (253-459)||(6873-7079)
[»] chr8 (1 HSPs)
chr8 (253-459)||(35194958-35195164)
[»] scaffold1779 (1 HSPs)
scaffold1779 (186-459)||(48-321)
[»] chr3 (3 HSPs)
chr3 (180-281)||(54630176-54630277)
chr3 (192-241)||(17223707-17223756)
chr3 (190-231)||(13226970-13227011)
[»] chr6 (4 HSPs)
chr6 (161-214)||(31058812-31058865)
chr6 (192-241)||(14543003-14543052)
chr6 (104-153)||(31058724-31058773)
chr6 (191-229)||(4639385-4639423)
[»] scaffold0008 (1 HSPs)
scaffold0008 (192-241)||(265168-265217)
[»] chr7 (4 HSPs)
chr7 (192-241)||(6930438-6930487)
chr7 (190-231)||(1399882-1399923)
chr7 (190-231)||(18961072-18961112)
chr7 (190-231)||(18993033-18993073)
[»] chr5 (1 HSPs)
chr5 (192-241)||(19153780-19153829)
[»] scaffold0625 (1 HSPs)
scaffold0625 (190-231)||(8623-8664)
[»] scaffold0330 (2 HSPs)
scaffold0330 (73-118)||(13433-13478)
scaffold0330 (118-153)||(13377-13412)
[»] chr2 (1 HSPs)
chr2 (193-241)||(17442387-17442435)
[»] chr1 (4 HSPs)
chr1 (368-444)||(5478421-5478497)
chr1 (26-82)||(9857852-9857906)
chr1 (191-229)||(31265991-31266029)
chr1 (192-228)||(49771361-49771397)
[»] scaffold0477 (1 HSPs)
scaffold0477 (191-229)||(8693-8731)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 161 - 462
Target Start/End: Complemental strand, 18343685 - 18343384
Alignment:
Q  161 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343685 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 18343586  T
Q  261 actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctct 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343585 actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctct 18343486  T
Q  361 tcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343485 tcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgc 18343386  T
Q  461 at 462  Q
    ||    
T  18343385 at 18343384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 18343802 - 18343719
Alignment:
Q  70 gaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343802 gaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 18343719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 18343824 - 18343878
Alignment:
Q  28 catatctaactagataatgttgttttgatataaggttctaacgaatccatatttg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343824 catatctaactagataatgttgttttgatataaggttctaacgaatccatatttg 18343878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 506506 - 506555
Alignment:
Q  192 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  506506 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 506555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 18042124 - 18042075
Alignment:
Q  192 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18042124 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 18042075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 323
Target Start/End: Original strand, 50593542 - 50593696
Alignment:
Q  168 tatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataa 267  Q
    |||||||  |||||||||| | ||| ||||||| ||||  |||||||| | || | ||| |||||||||||| ||||||| ||| |||||  ||||||||    
T  50593542 tattttttgatcgatttatgcacgatgagccgtgtgagacgaaaatctaacgtgcagtt-tgtaatagagatagaattgataaacaaccactaactataa 50593640  T
Q  268 ccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcct 323  Q
    |||| |||||||||||| |  ||||||||||| ||||| ||| ||| |||||||||    
T  50593641 cccccaaagaaccagatccaataaacaacatcaaggaaaaattaaaagaaaagcct 50593696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 36639090 - 36639055
Alignment:
Q  47 ttgttttgatataaggttctaacgaatccatatttg 82  Q
    |||||||||||||| |||||||||||||||||||||    
T  36639090 ttgttttgatataatgttctaacgaatccatatttg 36639055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 18179734 - 18179696
Alignment:
Q  191 gaggagccgtatgaggtgaaaatctcatgtacggttctg 229  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  18179734 gaggagccgtatgagatgaaaatctcacgtacggttctg 18179696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 270; Significance: 1e-150; HSPs: 6)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 161 - 462
Target Start/End: Original strand, 163684 - 163985
Alignment:
Q  161 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  163684 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataactatca 163783  T
Q  261 actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctct 360  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  163784 actataaccccaaaagaaccagattccgcaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcgaaaaatatgttct 163883  T
Q  361 tcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgc 460  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  163884 ttaggcacttgagcccgcttggatcacatctagacaaatagaagtagggcgatgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtatgc 163983  T
Q  461 at 462  Q
    ||    
T  163984 at 163985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 185 - 459
Target Start/End: Complemental strand, 278382 - 278106
Alignment:
Q  185 attcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaata--accatcaactataaccccaaaagaaccag 282  Q
    ||||||||||||| | |||||  |||| |||||||| | ||| || | ||||||||||| | ||||| |  |||||| ||||||||||||||||||||||    
T  278382 attcgcgaggagctggatgagaagaaactctcatgtccagttttggagtagagatggaactaagaaagagaaccatcgactataaccccaaaagaaccag 278283  T
Q  283 attccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttgg 382  Q
    ||| || ||||||||| |||||||||||||||||||| |||  ||||| |||   ||||  || || | |||||||||||| |||||||| |||||||||    
T  278282 atttcgcaaacaacatagaggaagaatgaaaggaaaatccttccgaggcaatcgtatttgttttggtagatatgctcttcaagcacttgaacccgcttgg 278183  T
Q  383 atcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacg 459  Q
    |||||  | ||||| ||||||||||| ||| | |||||  ||||| |||  || || ||||| ||||||||||||||    
T  278182 atcacggcgagacagatagaagcaggacgaagagcaataacacgatatgcacgtcgtggtggaaaaatatgggtacg 278106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 163519 - 163465
Alignment:
Q  28 catatctaactagataatgttgttttgatataaggttctaacgaatccatatttg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  163519 catatctaactagataatgttgttttgatataaggttctaacgaatccatatttg 163465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 190645 - 190687
Alignment:
Q  190 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 232  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  190645 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 190687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 163542 - 163589
Alignment:
Q  71 aatccatatttggttctatatcaaagcaagatatacaaatttctaata 118  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  163542 aatccatatttggttttatatccaagcaagatatacaaatttctaata 163589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 163610 - 163645
Alignment:
Q  118 atgtcaaaaaatcccgcgattgtattctattttaaa 153  Q
    ||||||||||||||||||||| ||||||||||||||    
T  163610 atgtcaaaaaatcccgcgattctattctattttaaa 163645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 253 - 459
Target Start/End: Original strand, 6873 - 7079
Alignment:
Q  253 aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 352  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6873 aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 6972  T
Q  353 tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatat 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||    
T  6973 tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatat 7072  T
Q  453 gggtacg 459  Q
    |||||||    
T  7073 gggtacg 7079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 253 - 459
Target Start/End: Original strand, 35194958 - 35195164
Alignment:
Q  253 aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 352  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35194958 aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 35195057  T
Q  353 tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatat 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||    
T  35195058 tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatat 35195157  T
Q  453 gggtacg 459  Q
    |||||||    
T  35195158 gggtacg 35195164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 186 - 459
Target Start/End: Original strand, 48 - 321
Alignment:
Q  186 ttcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagatt 285  Q
    |||||||||||| | |||||  |||| |||||||| | |||||||| ||||||||||||| | ||| || ||||||||||||||||||||||||| ||||    
T  48 ttcgcgaggagctggatgagaagaaactctcatgtccagttctgtagtagagatggaattcataaacaaacatcaactataaccccaaaagaacccgatt 147  T
Q  286 ccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatc 385  Q
     |||||||||||| ||||||||||||| || | | | ||||||||||||   ||||  ||||| | |||||||||||| |||||||| |||||||||||     
T  148 tcgtaaacaacatagaggaagaatgaaggggatatcttatcgaggtaatcggatttgtttcggtagatatgctcttcaagcacttgaacccgcttggatt 247  T
Q  386 acatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacg 459  Q
    |||||||||||||||||||| ||||| || |||||| |||||||||| ||||| ||||| ||| ||||||||||    
T  248 acatctagacaaatagaagcggggcgccgcgcaatgacacgaaatgtacgccgtggtggaaaactatgggtacg 321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 54630277 - 54630176
Alignment:
Q  180 gatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaac 279  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  54630277 gatttattcgtgaggagctgtatggggtgaaaatctcatgtacgattttgtaatagagatggaattgagaaataactatcaactataacaccaaaagaac 54630178  T
Q  280 ca 281  Q
    ||    
T  54630177 ca 54630176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 17223756 - 17223707
Alignment:
Q  192 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17223756 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 17223707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 13226970 - 13227011
Alignment:
Q  190 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 231  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13226970 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 13227011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 31058812 - 31058865
Alignment:
Q  161 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058812 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 31058865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 14543003 - 14543052
Alignment:
Q  192 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14543003 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 14543052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 31058724 - 31058773
Alignment:
Q  104 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058724 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 31058773  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 4639385 - 4639423
Alignment:
Q  191 gaggagccgtatgaggtgaaaatctcatgtacggttctg 229  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  4639385 gaggagccgtatgagatgaaaatctcacgtacggttctg 4639423  T

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Target: scaffold0008 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 265217 - 265168
Alignment:
Q  192 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 241  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  265217 aggagccgtatgaggtgaaaatcttatgtacggttctgtaatagagatgg 265168  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 6930438 - 6930487
Alignment:
Q  192 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 241  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6930438 aggagccgtatgaggtgaaaatctcatgtacggttctgtattagagatgg 6930487  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 1399882 - 1399923
Alignment:
Q  190 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 231  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  1399882 cgaggagtcgtatgaggtgaaaatctcatgtacggttctgta 1399923  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 18961072 - 18961112
Alignment:
Q  190 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 231  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18961072 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18961112  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 18993033 - 18993073
Alignment:
Q  190 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 231  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18993033 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18993073  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 19153829 - 19153780
Alignment:
Q  192 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 241  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19153829 aggagccgtacgaggtgaaaatctcatgtacggttctgtaatagagatgg 19153780  T

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Target: scaffold0625 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 8664 - 8623
Alignment:
Q  190 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 231  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8664 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 8623  T

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Target: scaffold0330 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 13478 - 13433
Alignment:
Q  73 tccatatttggttctatatcaaagcaagatatacaaatttctaata 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13478 tccatatttggttctatatcaaagcaaaatatacaaatttctaata 13433  T

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Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 13412 - 13377
Alignment:
Q  118 atgtcaaaaaatcccgcgattgtattctattttaaa 153  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13412 atgtcaaaaaatctcgcgattgtattctattttaaa 13377  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 17442435 - 17442387
Alignment:
Q  193 ggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 241  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  17442435 ggagccgtacgaggtgaaaatctcatgtacggttttgtaatagagatgg 17442387  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 5478497 - 5478421
Alignment:
Q  368 cttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgg 444  Q
    |||||||| |||||||||||||||||||||||||||    || |||||  |||||||||||||||||| ||||||||    
T  5478497 cttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgtcacgaaatgttcgtcgaggtgg 5478421  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 9857906 - 9857852
Alignment:
Q  26 atcatatctaactagataatgttgttttgatataaggttctaacgaatccatatttg 82  Q
    ||||| |||||||||||||||||||||||  ||||||||||||  ||||||||||||    
T  9857906 atcatgtctaactagataatgttgttttg--ataaggttctaaaaaatccatatttg 9857852  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 31266029 - 31265991
Alignment:
Q  191 gaggagccgtatgaggtgaaaatctcatgtacggttctg 229  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  31266029 gaggagccgtatgagatgaaaatctcacgtacggttctg 31265991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 49771397 - 49771361
Alignment:
Q  192 aggagccgtatgaggtgaaaatctcatgtacggttct 228  Q
    |||||||||||||||||||||||| |||||| |||||    
T  49771397 aggagccgtatgaggtgaaaatcttatgtacagttct 49771361  T

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Target: scaffold0477 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 8731 - 8693
Alignment:
Q  191 gaggagccgtatgaggtgaaaatctcatgtacggttctg 229  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  8731 gaggagccgtatgagatgaaaatctcacgtacggttctg 8693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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