View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_high_10 (Length: 373)
Name: NF1346_high_10
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 169 - 355
Target Start/End: Complemental strand, 8248482 - 8248302
Alignment:
| Q |
169 |
ggtgaagtttatgctaatgaatccaatttcgaaaccatgtgagcggttaaagaaaacggaagaaagcttaaaaacaatgaccaattttaaggatctttgg |
268 |
Q |
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| T |
8248482 |
ggtgaagtttatgctaatgaatccaatttcgaaaccatgtg------taaagaaaacggaagaaagcttaaaaacaatgaccaactttaaggaactttgc |
8248389 |
T |
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| Q |
269 |
cgaaagaggttgttgtaaaaatggaagtatgctcgttattcgctccgcattatgcggcgtgtcattcacctttttcttactttaact |
355 |
Q |
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| T |
8248388 |
cgaaagaggttgttggaaaaatggaagtatgctcgttattcgtttcgcattatgcggcatgtcattcatctttttctcactttaact |
8248302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 332
Target Start/End: Complemental strand, 8237319 - 8237153
Alignment:
| Q |
166 |
tatggtgaagtttatgctaatgaatccaatttcgaaaccatgtgagcggttaaagaaaacggaagaaagcttaaaaacaatgaccaattttaaggatctt |
265 |
Q |
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| T |
8237319 |
tatggtgaagtacatgcatatgaatccaagtttgaaaccacgtgagtggttaaacaaaactgaagaaatctttaaaccaacgatcaattttaagaaactt |
8237220 |
T |
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| Q |
266 |
tggcgaaagaggttgttgtaaaaatggaagtatgctcgttattcgctccgcattatgcggcgtgtca |
332 |
Q |
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| T |
8237219 |
catcaagaaaaactgttgtaaaaatggaagtatgttcgttattcgctccgcacaatacggcgtgtca |
8237153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 8243850 - 8243809
Alignment:
| Q |
270 |
gaaagaggttgttgtaaaaatggaagtatgctcgttattcgc |
311 |
Q |
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| T |
8243850 |
gaaagagattgttttaaaaatggaagtatgctcgttattcgc |
8243809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 8234032 - 8233968
Alignment:
| Q |
278 |
ttgttgtaaaaatggaagtatgctcgttattcgctccgcattatgcggcgtgtcattcacctttt |
342 |
Q |
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| T |
8234032 |
ttgttgtaaaaatggaagtatgttcattattcgctccgtacaatgcggtatgtcattcatctttt |
8233968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 8447449 - 8447379
Alignment:
| Q |
273 |
agaggttgttgtaaaaatggaagtatgctcgttattcgctccgcattatgcggcgtgtcattcaccttttt |
343 |
Q |
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| T |
8447449 |
agaggttgttgtaaaaatgaaagtatgcatgttattcgttccatataatgcggcatgttattcactttttt |
8447379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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