View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_high_18 (Length: 263)
Name: NF1346_high_18
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1831498 - 1831265
Alignment:
| Q |
1 |
gtaacaatagcctaaagttgcctacaattggttcgtaataacaaaactttcattcagtcatgtattcgtcgatttttcatgttttgccaagtatatgtct |
100 |
Q |
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| T |
1831498 |
gtaacaatagcctaaagttgcctacaattggttcgtaataacaaaactttcattcagtcatgtattcgtcgatttttcatgttttgccaagtatatgtct |
1831399 |
T |
|
| Q |
101 |
gtgtaacaataagtggtagccaccaatgtattcatgtatatagattagtattgtcaaataacaactataacatcgatgtagtatagctgaatttaaacaa |
200 |
Q |
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| T |
1831398 |
gtgtaacaataagtggtagccaccaatgtattcatgtatatagattagtattgtcaaataacaactataacatcgatgtagtatagctgaatttaaacaa |
1831299 |
T |
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| Q |
201 |
accgttattattttgtgatacaatatctagaagt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1831298 |
accgttattattttgtgatacaatatctagaagt |
1831265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 1865941 - 1865708
Alignment:
| Q |
1 |
gtaacaatagcctaaagttgcctacaattggttcgtaataacaaaactttcattcagtcatgtattcgtcgatttttcatgttttgccaagtatatgtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865941 |
gtaacaatagcctaaagttgcctacaattggttcgtaataacaaaactttcattcagtcatgtattcgtcgatttttcatgttttgccaagtatatgtct |
1865842 |
T |
|
| Q |
101 |
gtgtaacaataagtggtagccaccaatgtattcatgtatatagattagtattgtcaaataacaactataacatcgatgtagtatagctgaatttaaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865841 |
gtgtaacaataagtggtagccaccaatgtattcatgtatatagattagtattgtcaaataacaactataacatcgatgtagtatagctgaatttaaacaa |
1865742 |
T |
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| Q |
201 |
accgttattattttgtgatacaatatctagaagt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1865741 |
accgttattattttgtgatacaatatctagaagt |
1865708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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