View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_high_21 (Length: 251)
Name: NF1346_high_21
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_high_21 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 2412219 - 2411981
Alignment:
| Q |
13 |
aatataaaatgatttcatgaaaatgtgaaatgacataaatttcaaatcaatagggcttatagagtattataaagggtgttgtatcatgtattgcttgaat |
112 |
Q |
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| T |
2412219 |
aatataaaatgatttcatgaaaatgtaaaatgacataaatttcaaatcaatagggcttatagagtattataaagggtgttgtatcatgtattgcttgaat |
2412120 |
T |
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| Q |
113 |
taatgtgcagggggactcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctattccaagtatatggcag |
212 |
Q |
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| T |
2412119 |
taatgtgcagggggactcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctactccaagtatatggcag |
2412020 |
T |
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| Q |
213 |
ttacaaagcatacatttaactgtggtggcgtctttgtca |
251 |
Q |
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| T |
2412019 |
ctacaaagcatacatttaactgtggtggcgtctttgtca |
2411981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 14490 - 14366
Alignment:
| Q |
127 |
actcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctattccaagtatatggcagttacaaagcataca |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
14490 |
actcatgttcaagttacctgcaagcaatcttcagtatgtgacatctataacattcttacttacaacctattccaagtatatggcagctacaaagcacaca |
14391 |
T |
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| Q |
227 |
tttaactgtggtggcgtctttgtca |
251 |
Q |
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| T |
14390 |
tttaactgtggtggcgtctttgtca |
14366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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