View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_high_27 (Length: 209)
Name: NF1346_high_27
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_high_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27404532 - 27404740
Alignment:
| Q |
1 |
tttatttgcttgtgcctttgtagtttcaagatagaagcacgtgttctcttcagatactgtgtttaattttgatgtgatttttaggtgataaactagttca |
100 |
Q |
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| T |
27404532 |
tttatttgcttgtgcctttgtagtttcaagatagaagcacgtgttctattcagatactgtgtttaattttgttgagatttttaggtgataaactagttca |
27404631 |
T |
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| Q |
101 |
gtcttctctttttggtcaaattatacattttgttgagtattttaagcctaattatttagcattgtcatccatattgaagcatcaataccttatctttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||| |
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| T |
27404632 |
gtcttctctttttggtcaaattatacattttgttgagtattttaagcctaattatttaacaatttcatccatattgaagcatcaataccttgtctttatg |
27404731 |
T |
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| Q |
201 |
catagatat |
209 |
Q |
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| T |
27404732 |
catagatat |
27404740 |
T |
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