View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_high_6 (Length: 467)
Name: NF1346_high_6
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 85 - 457
Target Start/End: Original strand, 46628736 - 46629112
Alignment:
| Q |
85 |
ataaattattgatattatatattcaactaaggtccaagactcaggaaacatatttgctgctgttaccgacatttaccacatatatgtactatttaacata |
184 |
Q |
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| T |
46628736 |
ataaattattgatattatatattcaactaaggtccaagactcaggaaacatatttgctgctgttaccgacatttaccacatatatgtactatttaacata |
46628835 |
T |
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| Q |
185 |
tggtttagagtgatttgcaaataacttgtacaattttacagaattaagggtatacatcatagagaaggcaatgaggaaaattccaaaggtggtgtttcct |
284 |
Q |
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| T |
46628836 |
tggtttagagtgatttgcaaataacttgtacaattttacagaattaagggtatacatcatagagaaggcaatgaggaaaattccaaaggtggtgtttcct |
46628935 |
T |
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| Q |
285 |
ccaacagaacaccttgtaaaatgggggagc--atatgtaaacatgccatgtgattgccaactagtggtttgtatatgaaaatatatccttcagatcaaaa |
382 |
Q |
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| T |
46628936 |
ccaacagaacaccttgtaaaatgggggagcatatatgtaaacatgccatgtgattgccaactagtggtttgtatatgaaaatatatccttcagatcaaaa |
46629035 |
T |
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| Q |
383 |
caaatatgcaaattaattacttactctat--tatgaataagatgggcctatagctattaatttgatgtatacctatg |
457 |
Q |
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| T |
46629036 |
caaatatgcaaattaattacttactctattatatgaataagatgggcctatagctattaatttgatgtatacctatg |
46629112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 46628656 - 46628697
Alignment:
| Q |
30 |
tttttaaccatagaatagaagcaaatttttcatcaaatattg |
71 |
Q |
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| T |
46628656 |
tttttaaccatagaatagaagcaaatttttcatcaaatattg |
46628697 |
T |
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