View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1346_low_10 (Length: 436)

Name: NF1346_low_10
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1346_low_10
NF1346_low_10
[»] chr5 (4 HSPs)
chr5 (107-407)||(10465358-10465658)
chr5 (19-83)||(10465016-10465080)
chr5 (199-239)||(27581861-27581901)
chr5 (199-239)||(38892027-38892067)
[»] chr7 (2 HSPs)
chr7 (199-245)||(48608030-48608076)
chr7 (165-234)||(43301477-43301545)
[»] chr8 (2 HSPs)
chr8 (199-236)||(26468138-26468175)
chr8 (199-239)||(22653157-22653197)
[»] chr4 (2 HSPs)
chr4 (212-245)||(54060298-54060331)
chr4 (199-239)||(52021539-52021579)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 107 - 407
Target Start/End: Original strand, 10465358 - 10465658
Alignment:
Q  107 taaaaagaaataatgacagtgaagtctgactaagtcgttacgtcccacactataaaatata-ggttaaatatatttttgatctgtataaatattaaatat 205  Q
    |||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||    
T  10465358 taaaaagaaagaatgatagtgaagtttgactaaatcgttacgtcccacactataaaatataaggttaaatataattttaatttgtataaatattaaatat 10465457  T
Q  206 acaaatttttcgttttagtcatttt-aaaaaatttattcgaatcaaagttagcagcctcttacaactaacggggtttaaatttagcagcctcctacaatc 304  Q
    |||||||||| |||||| ||||||| ||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  10465458 acaaattttttgttttaatcatttttaaaaaatttcttcaaatcaaagttagcagcctcctacaaccaacggggtttaaatttagcagcctcctacaatc 10465557  T
Q  305 taaacgaatcaaagctctaa------ggatggtgttagctatcccaannnnnnnnnnnnnnnaataagtaatggatttttatgtttagttacactaataa 398  Q
    |||||||||||||| |||||      |||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||    
T  10465558 taaacgaatcaaagttctaattatgcggatggtgttagctatcccaa--------tttttttaataagtaatggatttttatgtttagttacactaataa 10465649  T
Q  399 tgtggattt 407  Q
    |||||||||    
T  10465650 tgtggattt 10465658  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 10465016 - 10465080
Alignment:
Q  19 tcagcaggcacggcatcacatacagtacatgggtcttaaccctcactacttttagaaatataata 83  Q
    ||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10465016 tcagcagacacgacatcacatacagtacatgggtcttgaccctcactacttttagaaatataata 10465080  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 27581901 - 27581861
Alignment:
Q  199 taaatatacaaatttttcgttttagtcattttaaaaaattt 239  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  27581901 taaatatacaaacttttcgttttagtccttttaaaaaattt 27581861  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 38892067 - 38892027
Alignment:
Q  199 taaatatacaaatttttcgttttagtcattttaaaaaattt 239  Q
    ||||||||  || ||||||||||||||||||||||||||||    
T  38892067 taaatatattaacttttcgttttagtcattttaaaaaattt 38892027  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 48608076 - 48608030
Alignment:
Q  199 taaatatacaaatttttcgttttagtcattttaaaaaatttattcga 245  Q
    ||||||||| | |||||||||||| ||||||||||||| ||||||||    
T  48608076 taaatatactagtttttcgttttaatcattttaaaaaaattattcga 48608030  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 43301477 - 43301545
Alignment:
Q  165 ataggttaaatatatttttgatctgtataaatattaaatatacaaatttttcgttttagtcattttaaaa 234  Q
    ||||||||||||| |||||||||  |||||||| ||||||||  || ||||||||||||||  |||||||    
T  43301477 ataggttaaatatgtttttgatccctataaata-taaatatatgaacttttcgttttagtccctttaaaa 43301545  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 26468175 - 26468138
Alignment:
Q  199 taaatatacaaatttttcgttttagtcattttaaaaaa 236  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  26468175 taaatatataaatttttcgttttagtcattataaaaaa 26468138  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 22653197 - 22653157
Alignment:
Q  199 taaatatacaaatttttcgttttagtcattttaaaaaattt 239  Q
    |||||||  ||||||||||||||||||||| ||||||||||    
T  22653197 taaatatgaaaatttttcgttttagtcattctaaaaaattt 22653157  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 54060298 - 54060331
Alignment:
Q  212 ttttcgttttagtcattttaaaaaatttattcga 245  Q
    ||||| ||||||||||||||||||||||||||||    
T  54060298 ttttctttttagtcattttaaaaaatttattcga 54060331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 52021579 - 52021539
Alignment:
Q  199 taaatatacaaatttttcgttttagtcattttaaaaaattt 239  Q
    |||||||| ||||||||||||||||||||| ||||| ||||    
T  52021579 taaatatataaatttttcgttttagtcattctaaaacattt 52021539  T

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