View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_11 (Length: 433)
Name: NF1346_low_11
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 173 - 433
Target Start/End: Original strand, 3123180 - 3123444
Alignment:
| Q |
173 |
acaaattgaaaagtggaatttctatcacaaacctagttgttcatcattcaatatttcctttccctaacttccctcatccatcaatatgtcattgttgata |
272 |
Q |
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| T |
3123180 |
acaaattgaaaagtggaaattctatcacaaacctagttgttcatcattcaatatttcctctccctaacttccctcatccatcaatatgtcattgttgata |
3123279 |
T |
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| Q |
273 |
agtccattttcctttgattcttctatatataagaaataaagtatttggttgacaaattagcaaacttgtatatctaaactcgatacaattatatatacaa |
372 |
Q |
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| T |
3123280 |
agtccattttcctttgattcttctatatatatgaaatatagtatttggttgacaaattagcaaacttgtatatctaaactcgagacaat----tatacaa |
3123375 |
T |
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| Q |
373 |
tattttgttattttttg--------gttgcttccaatgatgtaaaattcgtatgttctaccatttatgt |
433 |
Q |
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| T |
3123376 |
tattttgttaatttttgcaattgtagttgcttacaatgatgtaaaattcgtatgttcttccatttatgt |
3123444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 3123142 - 3123184
Alignment:
| Q |
62 |
atgaaggagctactcattgagcacgcgtatcacgtactacaaa |
104 |
Q |
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| T |
3123142 |
atgaaggagctactcattgagcacgcgtatcacgtactacaaa |
3123184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 32278435 - 32278372
Alignment:
| Q |
239 |
acttccctcatccatcaa-tatgtcattgttgataagtccattttcctttgattcttctatatat |
302 |
Q |
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| T |
32278435 |
acttccctcatccatcaattatatcattgttgataagt-cagtttcctttgactcttatatatat |
32278372 |
T |
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