View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1346_low_15 (Length: 378)

Name: NF1346_low_15
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1346_low_15
NF1346_low_15
[»] chr5 (4 HSPs)
chr5 (124-369)||(33808045-33808288)
chr5 (124-369)||(33811699-33811942)
chr5 (124-292)||(33816617-33816783)
chr5 (162-211)||(22763905-22763955)
[»] chr6 (4 HSPs)
chr6 (124-292)||(31151928-31152097)
chr6 (124-292)||(22981532-22981708)
chr6 (124-292)||(23806700-23806876)
chr6 (126-218)||(1111378-1111468)
[»] chr3 (8 HSPs)
chr3 (124-292)||(50603233-50603401)
chr3 (277-369)||(54972108-54972200)
chr3 (132-370)||(18556230-18556475)
chr3 (124-292)||(44782526-44782705)
chr3 (145-292)||(54967212-54967368)
chr3 (127-211)||(39298824-39298908)
chr3 (145-282)||(54979854-54980000)
chr3 (125-215)||(17645809-17645897)
[»] chr7 (9 HSPs)
chr7 (126-369)||(4842573-4842827)
chr7 (124-292)||(25857133-25857309)
chr7 (124-292)||(4835577-4835754)
chr7 (124-213)||(13465046-13465137)
chr7 (162-211)||(27341025-27341074)
chr7 (244-292)||(24380113-24380161)
chr7 (126-211)||(24379370-24379457)
chr7 (124-220)||(17845873-17845969)
chr7 (145-211)||(38994151-38994218)
[»] chr2 (4 HSPs)
chr2 (30-133)||(15076134-15076237)
chr2 (33-133)||(15073341-15073441)
chr2 (145-209)||(37037971-37038035)
chr2 (242-276)||(37038074-37038108)
[»] scaffold0003 (2 HSPs)
scaffold0003 (242-366)||(342145-342269)
scaffold0003 (124-211)||(342306-342396)
[»] chr4 (4 HSPs)
chr4 (145-369)||(9757138-9757370)
chr4 (126-213)||(37286972-37287059)
chr4 (124-211)||(42682924-42683012)
chr4 (161-193)||(25003037-25003069)
[»] chr1 (2 HSPs)
chr1 (124-292)||(29706856-29707024)
chr1 (124-211)||(27642137-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (127-276)||(26516-26663)
[»] chr8 (4 HSPs)
chr8 (124-292)||(41481634-41481813)
chr8 (124-292)||(36167633-36167811)
chr8 (242-289)||(18951129-18951176)
chr8 (170-215)||(18951207-18951252)
[»] scaffold0479 (1 HSPs)
scaffold0479 (124-292)||(2755-2934)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 124 - 369
Target Start/End: Original strand, 33808045 - 33808288
Alignment:
Q  124 ccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc 223  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  33808045 ccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg--tc 33808142  T
Q  224 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatcagagcactcgttgctctggga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  33808143 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacagtggtatcagagcactcgttgctctggga 33808242  T
Q  324 ctctgaattttcgtatctgcaagataattcttagtatgctctgtgg 369  Q
    || ||| ||||||||| |||||||||||||||| ||||||||||||    
T  33808243 ctatgagttttcgtatatgcaagataattcttaatatgctctgtgg 33808288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 124 - 369
Target Start/End: Original strand, 33811699 - 33811942
Alignment:
Q  124 ccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc 223  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  33811699 ccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg--tc 33811796  T
Q  224 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatcagagcactcgttgctctggga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  33811797 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacagtggtatcagagcactcgttgctctggga 33811896  T
Q  324 ctctgaattttcgtatctgcaagataattcttagtatgctctgtgg 369  Q
    || ||| ||||||||| |||||||||||||||| ||||||||||||    
T  33811897 ctatgagttttcgtatatgcaagataattcttaatatgctctgtgg 33811942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 33816617 - 33816783
Alignment:
Q  124 ccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc 223  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  33816617 ccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgtgtc 33816714  T
Q  224 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33816715 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaa 33816783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 22763955 - 22763905
Alignment:
Q  162 tcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 211  Q
    ||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  22763955 tcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 22763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 124 - 292
Target Start/End: Complemental strand, 31152097 - 31151928
Alignment:
Q  124 ccattattattatagtggagatttaagaggcttacggatcccgtggtttttc-cttactcacattgagaaggttttccacgctaaaattttgttgtgtgt 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||||    
T  31152097 ccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtgtgt 31151998  T
Q  223 cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  31151997 cattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaa 31151928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 22981532 - 22981708
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgt- 220  Q
    ||||||| ||||||||||| | ||||||||||  | || ||||||||||||||| || |||||||||||||||||||||||||||||||| |  |||||     
T  22981532 ccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattct-ctgtgtc 22981630  T
Q  221 ------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
           | |||||  |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  22981631 attacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtcatttcccaa 22981708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 292
Target Start/End: Complemental strand, 23806876 - 23806700
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgt- 220  Q
    ||||||| ||||||||||| | ||||||||||  | || ||||||||||||||| || |||||||||||||||||||||||||||||||| |  |||||     
T  23806876 ccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattct-ctgtgtc 23806778  T
Q  221 ------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
           | |||||  |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  23806777 attacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtcatttcccaa 23806700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 1111468 - 1111378
Alignment:
Q  126 attattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt 218  Q
    ||||||||||||||  ||||||||||| |||| |  |||| || |||||||||| | ||||| ||||||||||| || |||||||||||||||    
T  1111468 attattattatagt--agatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 50603233 - 50603401
Alignment:
Q  124 ccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc 223  Q
    ||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  50603233 ccattattattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgagaaggttttccacgctaaaattttattgtgtgtc 50603332  T
Q  224 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    ||||||||||| |||||||||| |||||||||||||||||||||| ||||||   | ||||||||||||    
T  50603333 attttacgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttcccaa 50603401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 277 - 369
Target Start/End: Complemental strand, 54972200 - 54972108
Alignment:
Q  277 agcaggcatttcccaatagtggtatcagagcactcgttgctctgggactctgaattttcgtatctgcaagataattcttagtatgctctgtgg 369  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||  | |||||||||||||||| |||||||||||||||||||    
T  54972200 agcaggcatttcccaacagtggtatcagagcactcgttgctctgggactgtgaggtatcgtatctgcaagatagttcttagtatgctctgtgg 54972108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 132 - 370
Target Start/End: Complemental strand, 18556475 - 18556230
Alignment:
Q  132 attatagtggagatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt--- 226  Q
    |||||||||||  |||||||||||   || |||||||||||||  |||| |||| ||||||||||||||||||||||||||||| |   ||||||||       
T  18556475 attatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaaggttttccacgctaaaattttat---gtgtcattacg 18556379  T
Q  227 --------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatcagagcactcgttgctc 318  Q
            | ||||||| |||   || ||||||||||||||| |||||||| |||||| | |||  |||||||| |||||||||| |||||||||| ||     
T  18556378 cttatatttcacgtttctgctg--gtacctattttgagttcatggaggaggcaaattatgtaggtgtttcccaacagtggtatcaaagcactcgtttcta 18556281  T
Q  319 tgggactctgaattttcgtatctgcaagataattcttagtatgctctgtggt 370  Q
    ||||||| ||   | |||||||||||||||||||||| ||||||| ||||||    
T  18556280 tgggactatg-ggtgtcgtatctgcaagataattctttgtatgctatgtggt 18556230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 292
Target Start/End: Complemental strand, 44782705 - 44782526
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgt 220  Q
    ||||||| ||||||||||| | |||||||||   | || |||||||||||||  |||| |||| ||||||||||||||||||||||||||| | || |||    
T  44782705 ccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgt 44782607  T
Q  221 gtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    ||||||           | ||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  44782606 gtcattacgtttatatttcacgtttccgcta--gtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaa 44782526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 54967368 - 54967212
Alignment:
Q  145 tttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgt 232  Q
    ||||||||||  | || ||||||||||||||| || |||| ||||||||||||||||||||||||||| | || |||||||||           | ||||    
T  54967368 tttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgcttttatttcacgt 54967270  T
Q  233 ttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    ||||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  54967269 ttccgcta--gtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaa 54967212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 39298824 - 39298908
Alignment:
Q  127 ttattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 211  Q
    |||| |||||||||||  ||||||||||  | || ||||||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  39298824 ttatcattatagtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 282
Target Start/End: Complemental strand, 54980000 - 54979854
Alignment:
Q  145 tttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgt 232  Q
    ||||||||||  | || ||||||||||||||| || |||| ||||||||||||||||| ||||||||| | || |||||||||           | ||||    
T  54980000 tttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaattctctt-tgtgtcattacacttttatttcacgt 54979902  T
Q  233 ttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg 282  Q
    ||||||||  |||| ||||||||||| ||||||||||||||||| |||||    
T  54979901 ttccgcta--gtgcttattttgagttgacggaggagggaaattatgcagg 54979854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 17645809 - 17645897
Alignment:
Q  125 cattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 215  Q
    |||||| |||||||||||  ||||||| ||| | |  |||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  17645809 cattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 126 - 369
Target Start/End: Complemental strand, 4842827 - 4842573
Alignment:
Q  126 attattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgt 222  Q
    ||||| ||||||||||| | ||||||||||  | || ||| |||||||||  |||| |||||||||||||||||||||||||||||||| | || |||||    
T  4842827 attatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgt 4842729  T
Q  223 catt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatcagagcactc 311  Q
    ||||           | ||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  4842728 cattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacagtggtatcagagcactc 4842631  T
Q  312 gttgctctgggactctgaattttcgtatctgcaagataattcttagtatgctctgtgg 369  Q
    |||||||||||| | |||  | ||||||||||||||||||||||||||||||||||||    
T  4842630 gttgctctgggattgtgaggtgtcgtatctgcaagataattcttagtatgctctgtgg 4842573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 292
Target Start/End: Complemental strand, 25857309 - 25857133
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgttgtgtg 221  Q
    ||||||| ||||||||||| | ||||||||||  | || |||||||||||||||||  |||||||||||||||||||||||||||||||| | |   |||    
T  25857309 ccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaattctct---gtg 25857213  T
Q  222 tcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    |||||           | ||||||||||||  ||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  25857212 tcattacgcttatatttcacgtttccgcta--gtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaa 25857133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 292
Target Start/End: Complemental strand, 4835754 - 4835577
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgt- 218  Q
    ||||||| ||||||||||| | ||||||||||  | || |||||||||||||  |||| |||||||||||||||||||||||||||||||| | | |||     
T  4835754 ccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgtc 4835655  T
Q  219 -----gtgt-cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
         || |  |||| |||||||| ||  ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  4835654 attacgtttatatttcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaa 4835577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 13465137 - 13465046
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatttt 213  Q
    ||||||| ||||||||||| | ||||||||||  | || ||| ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  13465137 ccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaaggttttccacgctaaaatttt 13465046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 27341074 - 27341025
Alignment:
Q  162 tcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 211  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27341074 tcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 24380113 - 24380161
Alignment:
Q  244 tgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaa 24380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 24379457 - 24379370
Alignment:
Q  126 attattattatagtgga-gatttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 211  Q
    ||||| ||||||||||| | ||||||||||  |  ||||||||||||||||| || |||||||||||||||||||||||| |||||||    
T  24379457 attatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaaggttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 17845873 - 17845969
Alignment:
Q  124 ccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 220  Q
    ||||||| |||||||||||  |||||||||   |  | ||| ||||||||||||| ||||||||| ||||||||||||| |||||||| | ||||||    
T  17845873 ccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttttccactctaaaattctcttgtgt 17845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
Q  145 tttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 211  Q
    |||||||||||   || ||||||||||||||| || ||| |||||||||||||||||||| |||||||    
T  38994218 tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt 38994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 15076237 - 15076134
Alignment:
Q  30 aaacaaccatagaatatttaatctataaattgttggtggtggtgtcttttggagttgaacttaactttgagtagtcatgacttgatttatatgaccatta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15076237 aaacaaccatagaatatttaatctataaattgttggtggtggtgtcatttggagttgaacttaactttgagtagtcatgacttgatttatatgaccatta 15076138  T
Q  130 ttat 133  Q
    ||||    
T  15076137 ttat 15076134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 15073441 - 15073341
Alignment:
Q  33 caaccatagaatatttaatctataaattgttggtggtggtgtcttttggagttgaacttaactttgagtagtcatgacttgatttatatgaccattatta 132  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  15073441 caaccatagaatatttaatctataaattgttggtggtggcgtcatttgaagttgaacttaactttgagtagtcatgacttgacttggatgaccattatta 15073342  T
Q  133 t 133  Q
    |    
T  15073341 t 15073341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 37037971 - 37038035
Alignment:
Q  145 tttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaa 209  Q
    ||||||||||  | || ||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  37037971 tttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 276
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
Q  242 agtgcctattttgagttcacggaggagggaaatta 276  Q
    ||||||||||||||||||||||||||| |||||||    
T  37038074 agtgcctattttgagttcacggaggagagaaatta 37038108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 242 - 366
Target Start/End: Complemental strand, 342269 - 342145
Alignment:
Q  242 agtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatcagagcactcgttgctctgggactctgaattttcgtatct 341  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||  | ||||||||    
T  342269 agtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaacagtggtatcagagcactcgttgctctgggactgtgaggtgtcgtatct 342170  T
Q  342 gcaagataattcttagtatgctctg 366  Q
    |||||||||||||||||||||||||    
T  342169 gcaagataattcttagtatgctctg 342145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 342396 - 342306
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaatt 211  Q
    ||||||| ||||||||||| | ||||||||||  | |||||||||||||| |||| || |||| |||||||||||||| ||||||||||||    
T  342396 ccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaatt 342306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 145 - 369
Target Start/End: Complemental strand, 9757370 - 9757138
Alignment:
Q  145 tttaagaggcttacggatcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgt 232  Q
    ||||||||||  | || ||||||||||||||| || |||||||||||||||||||||||||||||||| | || |||||||||           | ||||    
T  9757370 tttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgt 9757272  T
Q  233 ttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaatagtggtatcagagcactcgttgctctgggactctgaatt 332  Q
    ||||||||  ||||||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||| || |||||| ||||||| |||  |    
T  9757271 ttccgcta--gtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaacagtggtatcagagc-ctggttgctttgggactgtgaggt 9757175  T
Q  333 ttcgtatctgcaagataattcttagtatgctctgtgg 369  Q
     ||||||||||||||||||||||||||||||||||||    
T  9757174 gtcgtatctgcaagataattcttagtatgctctgtgg 9757138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 37287059 - 37286972
Alignment:
Q  126 attattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt 213  Q
    |||||||||||||||||  ||||||| ||||| || ||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  37287059 attattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 42683012 - 42682924
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 211  Q
    ||||||| ||||||||||| | |||||||||   | || ||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  42683012 ccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggttttccacgctgaaatt 42682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 25003069 - 25003037
Alignment:
Q  161 atcccgtggtttttccttactcacattgagaag 193  Q
    ||||||||||||||||||| |||||||||||||    
T  25003069 atcccgtggtttttccttattcacattgagaag 25003037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 124 - 292
Target Start/End: Complemental strand, 29707024 - 29706856
Alignment:
Q  124 ccattattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc 223  Q
    ||||||||||||||||||||||||||||||  || |  ||||||| || ||||||||||| |||||||||||||||| | ||||||||||||||||||||    
T  29707024 ccattattattatagtggagatttaagaggtctatgagtcccgtgattgttccttactcatattgagaaggttttcctcactaaaattttgttgtgtgtc 29706925  T
Q  224 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    ||||||| |||  |||||||||| |||||| |||||||||| ||| ||||||| | |||||||| ||||    
T  29706924 attttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatggaggcattttccaa 29706856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 27642137 - 27642225
Alignment:
Q  124 ccattattattatagtggagatttaagaggcttacggatcccgtg-gtttttccttactcacattgagaaggttttccacgctaaaatt 211  Q
    |||||||||||||||||||  |||||||| |    ||| ||||||  ||||||||| ||||||||||||||||||| ||||| ||||||    
T  27642137 ccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 276
Target Start/End: Complemental strand, 26663 - 26516
Alignment:
Q  127 ttattattatagtggagatttaagaggcttacggatcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt 226  Q
    |||| |||| ||||||  ||||||||||  | || |||||| ||||||||||||||||||||| |||||||||||| |||||||||||||  |||| |||    
T  26663 ttatcattagagtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgtt--gtgttatt 26566  T
Q  227 ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 276  Q
    |||||||| |||||||||| |||||||||||||||| |||||||| ||||    
T  26565 ttacgttttcgctaaagtgtctattttgagttcacgaaggagggagatta 26516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 41481634 - 41481813
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgt 220  Q
    ||||||| ||||||||||| | ||||||||||  | || |||||||||||||  |||| |||| ||||||||||||||||||||||||||| | || |||    
T  41481634 ccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgt 41481732  T
Q  221 gtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    ||||||           | ||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  41481733 gtcattacgtttatatttcacgtttccgcta--gtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaa 41481813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 36167633 - 36167811
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgt 220  Q
    ||||||| ||||||||||| | ||||||||||  | || ||| |||||||||  |||| |||| ||||||||||||||||||||||||||| | || |||    
T  36167633 ccattatcattatagtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgt 36167730  T
Q  221 gtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    ||||||           | ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36167731 gtcattacgtttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaa 36167811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 18951176 - 18951129
Alignment:
Q  242 agtgcctattttgagttcacggaggagggaaattaagcaggcatttcc 289  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||    
T  18951176 agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc 18951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 18951252 - 18951207
Alignment:
Q  170 tttttccttactcacattgagaaggttttccacgctaaaattttgt 215  Q
    |||| |||| |||||||||||||||||||||| ||||||||| |||    
T  18951252 ttttccctttctcacattgagaaggttttccatgctaaaattctgt 18951207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 2755 - 2934
Alignment:
Q  124 ccattattattatagtgga-gatttaagaggcttacggatcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgt 220  Q
    ||||||| ||||||||||| | ||||||||||  | || |||||||||||||  |||| |||||||||||||||||||||||||||||||| | || |||    
T  2755 ccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgt 2853  T
Q  221 gtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaa 292  Q
    |||           |||| |||||||||||  |||| ||||||||||||||||||| |||||||||| ||| |||||||||||    
T  2854 gtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcatgcatttcccaa 2934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University