View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_16 (Length: 377)
Name: NF1346_low_16
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 11195007 - 11194671
Alignment:
| Q |
11 |
cacagaattgcaatatgttactttctctaaccatggctacaagacaagggcaatcacacactttgcacaatgcacataaagaaaagaagataaaagctga |
110 |
Q |
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| T |
11195007 |
cacagaattgcaatatgttactttctctaaccatggctacaagacaagggcaatcacacacatt-cacaatgcacatatagaaaagaagataaaagctga |
11194909 |
T |
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| Q |
111 |
aaagttccattgaaaagactagaccatgtttggataaacaataaaatcaatcacttatagcataattgcaatattgtttccataaacagtctcacaaaat |
210 |
Q |
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| T |
11194908 |
aaagttccattgaaaagactagaccatgtttggataaacaataaaatcaatcacttatagcataattgcaatattgtttccataaacagtctcacaaaat |
11194809 |
T |
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| Q |
211 |
gcttatacaagtacatagtagctcagataaaccaatccaaataagacctaagtagcaaggtcaactttcaaattaccacaaaaattacactcaagaacgt |
310 |
Q |
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| T |
11194808 |
gcttatacaagtacatagtagctcagataaaccaatccaaataagacctaagtagcaaggtcaactttcaaattaccacaaaaattacactcaagaacgt |
11194709 |
T |
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| Q |
311 |
tagatttttcaccatcttttggaggcagaggagccata |
348 |
Q |
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| T |
11194708 |
tagatttttcaccatcttttggaggcagaggagccata |
11194671 |
T |
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