View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_18 (Length: 359)
Name: NF1346_low_18
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 30 - 325
Target Start/End: Complemental strand, 4708969 - 4708674
Alignment:
| Q |
30 |
cggaagactaacggattttcagcttcttgttttgttactgctattacggatgctctaaatcgaacatatggagaaccttgtaaccgtttacagaatcttg |
129 |
Q |
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| T |
4708969 |
cggaagactaacggattttcagcttcttgttttgttactgctattacggatgctctaaatcgaacatatggagaaccttgtaaccgtttacagaatcttg |
4708870 |
T |
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| Q |
130 |
agagaattccttcctattgaaactacttggtgtcactattattattaatgggttaccttagaaacttcacataaaattgaaaggtttgggatgccaatta |
229 |
Q |
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| T |
4708869 |
agagaattccttcctattgaaactacttggtgtcactattattattaatgggttaccttagaaacttcacataaaattgaaaggtttgggatgccaatta |
4708770 |
T |
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| Q |
230 |
tcgttgtttctattactcttccgttgtccccttcaattgaaactgttatgtctcccaaatctgcaaattatgcaaaatagagtggtacaatctctg |
325 |
Q |
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| T |
4708769 |
tcgttgtttctattactcttccgttgtccccttcaattgaaactgttatgtctcccaaatctgcaaattatgcaaaatagagtggtacaatctctg |
4708674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 34 - 264
Target Start/End: Complemental strand, 4746908 - 4746681
Alignment:
| Q |
34 |
agactaacggattttcagcttcttgttttgttactgctattacggatgctctaaatcgaacatatggagaaccttgtaaccgtttacagaatcttgagag |
133 |
Q |
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| T |
4746908 |
agactaatggattttcagcttcttgttttgtaactgctattacggatgctctaaatcgaacatatggagaaccttgcaaccgtttacagaatcttgtgag |
4746809 |
T |
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| Q |
134 |
aattccttcctattgaaactacttggtgtcactattattattaatgggttaccttagaaacttcacataaaattgaaaggtttgggatgccaattatcgt |
233 |
Q |
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| T |
4746808 |
aattccttcctattgaaactacttgatgtcaatattattat---tgggtttccttagaaacttcacgtaatgttgaaaggtttaggatgccaactaccgt |
4746712 |
T |
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| Q |
234 |
tgtttctattactcttccgttgtccccttca |
264 |
Q |
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| T |
4746711 |
tgtttctattactcttccgttttccccttca |
4746681 |
T |
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