View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_19 (Length: 349)
Name: NF1346_low_19
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 34541476 - 34541788
Alignment:
| Q |
6 |
agcaccacagaacccgatagaataattaaaattagttgaattaaagtctcgaattagcctcacacaaaactaaaaccgcaaagaaaattaatttgtataa |
105 |
Q |
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| T |
34541476 |
agcaacacagaacccgatagaataattaaaattagttgaattaaagtcccgaattaccctcacacaaaactaaaaccacaaagaaaaataatttgtataa |
34541575 |
T |
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| Q |
106 |
accctagaaactataagaaaataaaatgaagagaaatagattattacccctcaacggcggaacgaacatcgtgaatggaagctgtgctggaaggttttaa |
205 |
Q |
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| T |
34541576 |
accctagaaactataagaaaataaaatgaagagaaatagattattacccctcaacggcggaacgaacatcgtgaatggaagctgtgctggaaggttttaa |
34541675 |
T |
|
| Q |
206 |
gcaaacctcgactataataagcaaaatgaaacgaaaattagttgnnnnnnntggaataggaagataagattagagagagtggaagtaccagggacgagaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34541676 |
gcaaacctcgactataataagcaaaatgaaacgaaaattagttgaaaaaattggaataggaagataagattagagagagtggaagtaccagggacgagaa |
34541775 |
T |
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| Q |
306 |
ttttatcctccgg |
318 |
Q |
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||||||||||||| |
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| T |
34541776 |
ttttatcctccgg |
34541788 |
T |
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