View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_2 (Length: 580)
Name: NF1346_low_2
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 261 - 537
Target Start/End: Complemental strand, 10434480 - 10434204
Alignment:
| Q |
261 |
ccttaacacaacctataatcttattatactaatcacataagcttctcttagaattcatatatttgattttctaaacccaatcaacaaacactaaccaagc |
360 |
Q |
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| T |
10434480 |
ccttaacacatcctataatcttattatactaatcacataagcttctcttagaattcatatatttgattttctaaacccaatcaacaaacactaaccaagc |
10434381 |
T |
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| Q |
361 |
ttgcgtttacagttgttcgccacagtaaggacagaacgtgaaatcagccgccacattccgatcacagaaccggcatcgcaatgcgtccggcaacgtcgtt |
460 |
Q |
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| T |
10434380 |
ttgcgtttacagttgttcgccacagtaaggacagaacgtgaaatcagcagccacattccgatcacagaaccggcatcgcaatgcgtccggcaacgtcgtt |
10434281 |
T |
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| Q |
461 |
ccaccgctagacggcggcggagggagggaatgcgattgtggaaacatgaacttgcagtcttgacaatacaaaagagt |
537 |
Q |
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| T |
10434280 |
ccaccgctagacggcggtggagggagggaatgcgattgtggaaacatgaacttgcagtcttgacaatacaaaagagt |
10434204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 10434703 - 10434626
Alignment:
| Q |
1 |
agacaaccataatgttgatactatcatactttttaatggagaaagttggtactataaatgtgaaattagcttaaacaaa |
79 |
Q |
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| T |
10434703 |
agacaagcataatgttgatactatcatactttttaatggataaagttggta-tataaatgtgaaattagcttaaacaaa |
10434626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 10434605 - 10434544
Alignment:
| Q |
130 |
tactgttaataacaagggggaaaataaacatgtaaaaagtaacatgaatattaattttgtaa |
191 |
Q |
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| T |
10434605 |
tactgttaataacaagggggaaaataaacatgtaaaaagtaacatgaatattaattttgtaa |
10434544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 115
Target Start/End: Complemental strand, 10434649 - 10434618
Alignment:
| Q |
84 |
aaatgtgaaattagcttaaacaaaaatgcatt |
115 |
Q |
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| T |
10434649 |
aaatgtgaaattagcttaaacaaaaatgcatt |
10434618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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