View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1346_low_20 (Length: 344)

Name: NF1346_low_20
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1346_low_20
NF1346_low_20
[»] chr2 (8 HSPs)
chr2 (31-240)||(34101925-34102134)
chr2 (61-155)||(33941901-33941995)
chr2 (96-155)||(9477944-9478003)
chr2 (73-155)||(43984999-43985081)
chr2 (61-138)||(34652020-34652097)
chr2 (95-155)||(1810657-1810716)
chr2 (68-140)||(1939323-1939395)
chr2 (58-98)||(3070511-3070551)
[»] chr4 (7 HSPs)
chr4 (61-154)||(2996566-2996659)
chr4 (69-147)||(6987733-6987811)
chr4 (65-133)||(488114-488182)
chr4 (70-154)||(11264294-11264378)
chr4 (58-98)||(17976804-17976844)
chr4 (95-143)||(30668384-30668432)
chr4 (86-154)||(36722678-36722746)
[»] chr5 (1 HSPs)
chr5 (58-143)||(40205055-40205140)
[»] chr1 (5 HSPs)
chr1 (61-155)||(51695478-51695573)
chr1 (58-155)||(15515533-15515630)
chr1 (67-154)||(5756676-5756763)
chr1 (67-143)||(15437967-15438043)
chr1 (61-133)||(35925704-35925776)
[»] chr6 (4 HSPs)
chr6 (61-155)||(20368164-20368258)
chr6 (67-138)||(7148675-7148746)
chr6 (66-143)||(8035137-8035214)
chr6 (61-105)||(8147050-8147094)
[»] chr8 (2 HSPs)
chr8 (58-154)||(11415147-11415243)
chr8 (73-140)||(20672757-20672824)
[»] chr3 (1 HSPs)
chr3 (66-107)||(38319000-38319041)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 9e-98; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 34102134 - 34101925
Alignment:
Q  31 ctactgccataagcacttatcagagtcagtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagct 130  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34102134 ctactgccataagcacttatcagagtcagtttataaaaacagcttataacatgtacatactctattttcaacttattctcgtaaactatccaggatagct 34102035  T
Q  131 tataaaaacaactaataacttatacnnnnnnncgtttgactttattttatctcataggaatagcttatacataagcacttatgctgatctctcactatcc 230  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102034 tataaaaacaactaataacttatacaaaaaaacgtttgactttattttatctcataggaatagcttatacataagcacttatgctgatctctcactatcc 34101935  T
Q  231 caattccatt 240  Q
    ||||||||||    
T  34101934 caattccatt 34101925  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 33941995 - 33941901
Alignment:
Q  61 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 155  Q
    |||| |||||||||||| ||| || ||||| ||  |||||||||||| || |||||| |||| |||||||||| ||||||| | |||||||||||    
T  33941995 ttatgaaaacaacttatgacaagttcataagctgctttcaacttattatcataaactctccaagatagcttatgaaaacaagttataacttatac 33941901  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 9478003 - 9477944
Alignment:
Q  96 tttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 155  Q
    |||||||||||| || ||| || ||||||||||||||| ||||||||| |||||||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttataacttatac 9477944  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 43984999 - 43985081
Alignment:
Q  73 cttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 155  Q
    ||||||| |||| ||| ||||||||||| |||||| || ||| || | || |||||||||| ||||||||| |||| ||||||    
T  43984999 cttataatatgttcattatctattttcagcttattttcataagctcttcaagatagcttatgaaaacaacttataatttatac 43985081  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 34652020 - 34652097
Alignment:
Q  61 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaa 138  Q
    ||||| ||||||||||| |||||| ||||| || |||||||||||||  | ||| || |||| |||||||||| ||||    
T  34652020 ttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 1810716 - 1810657
Alignment:
Q  95 ttttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 155  Q
    |||||| |||||| || |||||| | || |||||||||||||||||||| |||||||||||    
T  1810716 ttttcagcttattttcataaactcttcaagatagcttataaaaacaact-ataacttatac 1810657  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 1939323 - 1939395
Alignment:
Q  68 aacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaaca 140  Q
    |||||||||| |||||| ||||| || |||||||||||||  | ||| || ||||| ||||||||| ||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaaca 1939395  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 3070511 - 3070551
Alignment:
Q  58 agtttataaaaacaacttataacatgtacataatctatttt 98  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  3070511 agtttataaaaacaacttataacatgtctataaactatttt 3070551  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 2996659 - 2996566
Alignment:
Q  61 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 154  Q
    |||| |||||||||||| |||||| ||||| || ||||||||||||| || ||  || |||| |||||||||| ||||||||| ||||||||||    
T  2996659 ttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttata 2996566  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 6987733 - 6987811
Alignment:
Q  69 acaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaata 147  Q
    ||||||||| |||||| ||||| ||||||||||||||||  | ||| || ||||||||||| || ||||| ||||||||    
T  6987733 acaacttatgacatgtccataaactattttcaacttatttccataagctctccaggatagcgtaaaaaaataactaata 6987811  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 488114 - 488182
Alignment:
Q  65 aaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttat 133  Q
    ||||||||||||| |||||| ||||| || |||||| ||||||  |||||| | |||| ||||||||||    
T  488114 aaaaacaacttatgacatgtgcataagctgttttcatcttatttacgtaaattctccaagatagcttat 488182  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 11264378 - 11264294
Alignment:
Q  70 caacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 154  Q
    |||||||| |||||| ||||| || |||||||||||||  | ||| || || ||||| |||||| ||||||||| ||||| ||||    
T  11264378 caacttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaacttataacatata 11264294  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 17976844 - 17976804
Alignment:
Q  58 agtttataaaaacaacttataacatgtacataatctatttt 98  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  17976844 agtttataaaaacaacttataacatgtctataaactatttt 17976804  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 30668384 - 30668432
Alignment:
Q  95 ttttcaacttattctcgtaaactatccaggatagcttataaaaacaact 143  Q
    |||||| |||| | || ||||||||||| ||||||||||||||||||||    
T  30668384 ttttcagcttaatttcataaactatccaagatagcttataaaaacaact 30668432  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 36722678 - 36722746
Alignment:
Q  86 cataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 154  Q
    ||||||||||||| | |||||| || ||| || | ||||||| ||||| ||||||||| ||||||||||    
T  36722678 cataatctattttaagcttattttcataagctcttcaggataacttatcaaaacaacttataacttata 36722746  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 40205055 - 40205140
Alignment:
Q  58 agtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaact 143  Q
    |||||||| ||||| |||||||||||| |||||||| |||||| ||||||    ||| || ||||||||||||||| |||||||||    
T  40205055 agtttatataaacagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaact 40205140  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 51695478 - 51695573
Alignment:
Q  61 ttataaaaacaacttataacat-gtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 155  Q
    ||||| ||||||||||| |||| || ||||| ||||||||| |||||| || |||| | |||| |||||||||| |||||| || |||||||||||    
T  51695478 ttatataaacaacttatcacattgttcataagctattttcagcttattttcataaattctccaagatagcttatgaaaacatctgataacttatac 51695573  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 15515630 - 15515533
Alignment:
Q  58 agtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 155  Q
    ||||||| |||||||||||| ||||||  |||  |||||||||| |||||  | ||| ||||||| |||| ||||| ||||||||| ||| |||||||    
T  15515630 agtttatgaaaacaacttatgacatgtcaatacgctattttcaatttatttccataagctatccatgataacttatgaaaacaacttatagcttatac 15515533  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 5756676 - 5756763
Alignment:
Q  67 aaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 154  Q
    ||||| ||||||| ||||| ||||  ||||||||||||||| | |||| || |||||| |||||||  ||||||||| |||| |||||    
T  5756676 aaacaccttataatatgtatataagatattttcaacttattttggtaagctctccaggctagcttacgaaaacaacttataatttata 5756763  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 15438043 - 15437967
Alignment:
Q  67 aaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaact 143  Q
    ||||||||||| |||||| |||||  || ||||| ||||||  |||||||| || |||||||| ||| |||||||||    
T  15438043 aaacaacttatgacatgttcataagttactttcagcttatttccgtaaactctcgaggatagcctatgaaaacaact 15437967  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 35925776 - 35925704
Alignment:
Q  61 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttat 133  Q
    |||| |||||| ||||| |||||| ||||| || |||||||||||||  | |||||| |||| ||||||||||    
T  35925776 ttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttat 35925704  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 20368164 - 20368258
Alignment:
Q  61 ttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttatac 155  Q
    |||| |||||||||||| |||||| ||||| ||| |||||||||||| || |||  | |||| || ||||||| ||||||||| |||||| ||||    
T  20368164 ttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaagaaagcttatgaaaacaacttataactcatac 20368258  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 7148746 - 7148675
Alignment:
Q  67 aaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaa 138  Q
    ||||||||||| || ||| ||||| |||||||||||||||| || ||| || |||||| |||||||| ||||    
T  7148746 aaacaacttatgacttgtccataagctattttcaacttattttcataagctctccagggtagcttattaaaa 7148675  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 8035137 - 8035214
Alignment:
Q  66 aaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaact 143  Q
    |||||||||||| |||||  |||||  | ||||||||||||| |||||| || || |||||| ||||| |||||||||    
T  8035137 aaaacaacttatgacatggtcataacttgttttcaacttattttcgtaagctttctaggataacttatgaaaacaact 8035214  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 8147050 - 8147094
Alignment:
Q  61 ttataaaaacaacttataacatgtacataatctattttcaactta 105  Q
    |||| ||||||||||||||||| | ||||| ||||||||||||||    
T  8147050 ttatgaaaacaacttataacatatgcataagctattttcaactta 8147094  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 11415243 - 11415147
Alignment:
Q  58 agtttataaaaacaacttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataacttata 154  Q
    |||||||  ||||| |||||||||||| ||||| ||||| ||| |||||| ||  ||||| || |||||||||||| |||||| |  ||||||||||    
T  11415243 agtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataacttata 11415147  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 20672824 - 20672757
Alignment:
Q  73 cttataacatgtacataatctattttcaacttattctcgtaaactatccaggatagcttataaaaaca 140  Q
    ||||| |||||| ||||| || |||||| |||||| || ||| || ||||||||||||||||||||||    
T  20672824 cttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaaca 20672757  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 38319041 - 38319000
Alignment:
Q  66 aaaacaacttataacatgtacataatctattttcaacttatt 107  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||    
T  38319041 aaaacaacttataacatgttcataagctattttcagcttatt 38319000  T

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