View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_23 (Length: 326)
Name: NF1346_low_23
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1831706 - 1831950
Alignment:
| Q |
1 |
tctacattattcataattattatatcttttgtgatatcaacaatgtagtaatgttggtttgttttatatagtatagttatatattgtgaattttgtaaat |
100 |
Q |
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| T |
1831706 |
tctacattattcataattattatatcttttgtgatatcaacaatgtagtaatgttggtttgttttatatagtatagttatatattgtgaattttgtaaat |
1831805 |
T |
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| Q |
101 |
tattaggctggagatgtgtcggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcctctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1831806 |
tattaggctggagatgtgtcggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcatctg |
1831905 |
T |
|
| Q |
201 |
gttgtaccaacattcaattggatcaaaacaaaattgtctctgctc |
245 |
Q |
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| T |
1831906 |
gttgaaccaacattcaattggatcaaaacaaaattgtctctgctc |
1831950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1866149 - 1866393
Alignment:
| Q |
1 |
tctacattattcataattattatatcttttgtgatatcaacaatgtagtaatgttggtttgttttatatagtatagttatatattgtgaattttgtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866149 |
tctacattattcataattattatatcttttgtgatatcaacaatgtagtaatgttggtttgttttatatagtatagttatatattgtgaattttgtaaat |
1866248 |
T |
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| Q |
101 |
tattaggctggagatgtgtcggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcctctg |
200 |
Q |
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| T |
1866249 |
tattaggctggagatgtgtcggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcatctg |
1866348 |
T |
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| Q |
201 |
gttgtaccaacattcaattggatcaaaacaaaattgtctctgctc |
245 |
Q |
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| T |
1866349 |
gttgaaccaacattcaattggatcaaaacaaaattgtctctgctc |
1866393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 2534169 - 2534317
Alignment:
| Q |
97 |
aaattattaggctggagatgtgtcggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcc |
196 |
Q |
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| T |
2534169 |
aaattattagggtgcaaatgtgtcggtgagttcagtgaaatttcgaggatttaccggaacttctgctagcggcttagctattcagttaaattgtagctct |
2534268 |
T |
|
| Q |
197 |
tctggttgtaccaacattcaattggatcaaaacaaaattgtctctgctc |
245 |
Q |
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| T |
2534269 |
tctggttgttatgacattttattggaacaaaacaacattgtttctgctc |
2534317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 2543613 - 2543761
Alignment:
| Q |
97 |
aaattattaggctggagatgtgtcggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcc |
196 |
Q |
| |
|
||||||||||| || | |||||||||||||| |||| || || ||||||||| |||||||| |||| || |||||||||||||||||||||| |||| |
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| T |
2543613 |
aaattattagggtgcaaatgtgtcggtgagttcagtgaaatttcaaggatttaccggaacttctgctagcggcttagctattcagttaaattgtagctct |
2543712 |
T |
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| Q |
197 |
tctggttgtaccaacattcaattggatcaaaacaaaattgtctctgctc |
245 |
Q |
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||||||||| ||||| |||||| |||||||| ||||| ||||||| |
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| T |
2543713 |
tctggttgttatgacattttattggaacaaaacaacattgtttctgctc |
2543761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 2556730 - 2556836
Alignment:
| Q |
131 |
gtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcctctggttgtaccaacattcaattggatcaaaaca |
230 |
Q |
| |
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|||||||||||||||||||| |||||||| |||| | | ||||| || | ||||||||| |||||||||||||| | |||||| |||||||||||| | |
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| T |
2556730 |
gtgacatatcgaggatttaccggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggttgtttcgacattctattggatcaaaata |
2556829 |
T |
|
| Q |
231 |
aaattgt |
237 |
Q |
| |
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| ||||| |
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| T |
2556830 |
acattgt |
2556836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 2566546 - 2566662
Alignment:
| Q |
121 |
ggtgagtgatgtgacatatcgaggatttactggaacttcagctaacgacttagctattcagttaaattgtggctcctctggttgtaccaacattcaattg |
220 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||| |||| | | ||||| || | ||||||||| ||||| |||||||| ||| |||| |||| |
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| T |
2566546 |
ggtgagttctgtgacatatcgaggatttattggaacttctgctagcaagatagctgttaatttaaattgtagctcccctggttgtttcaatattctattg |
2566645 |
T |
|
| Q |
221 |
gatcaaaacaaaattgt |
237 |
Q |
| |
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|||||||| || ||||| |
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| T |
2566646 |
gatcaaaataacattgt |
2566662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 2551104 - 2551148
Alignment:
| Q |
115 |
tgtgtcggtgagtgatgtgacatatcgaggatttactggaacttc |
159 |
Q |
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| T |
2551104 |
tgtgtcggtgagagatgtgacatatcgaggatttaccggaacttc |
2551148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 2546748 - 2546780
Alignment:
| Q |
112 |
agatgtgtcggtgagtgatgtgacatatcgagg |
144 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
2546748 |
agatgtgtcggtgagtgatgtaacatatcgagg |
2546780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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