View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1346_low_24 (Length: 302)

Name: NF1346_low_24
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1346_low_24
NF1346_low_24
[»] chr7 (4 HSPs)
chr7 (60-178)||(33721206-33721324)
chr7 (143-183)||(3387290-3387330)
chr7 (123-186)||(18147670-18147732)
chr7 (144-186)||(11508795-11508837)
[»] chr3 (3 HSPs)
chr3 (60-186)||(15777344-15777465)
chr3 (144-186)||(9733706-9733748)
chr3 (143-186)||(49969034-49969077)
[»] chr5 (2 HSPs)
chr5 (89-186)||(39176407-39176505)
chr5 (143-186)||(24068063-24068106)
[»] scaffold0009 (1 HSPs)
scaffold0009 (143-186)||(160392-160435)
[»] chr6 (2 HSPs)
chr6 (123-186)||(19769096-19769158)
chr6 (143-184)||(19400930-19400971)
[»] chr4 (4 HSPs)
chr4 (60-186)||(23974088-23974213)
chr4 (111-186)||(11153779-11153854)
chr4 (143-187)||(15239992-15240036)
chr4 (155-186)||(46224426-46224457)
[»] scaffold0461 (1 HSPs)
scaffold0461 (154-186)||(12317-12349)
[»] chr1 (2 HSPs)
chr1 (154-186)||(91083-91115)
chr1 (145-186)||(41136794-41136835)
[»] chr8 (2 HSPs)
chr8 (143-186)||(9883280-9883323)
chr8 (60-130)||(40391396-40391465)
[»] scaffold0120 (1 HSPs)
scaffold0120 (144-186)||(29145-29187)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 60 - 178
Target Start/End: Complemental strand, 33721324 - 33721206
Alignment:
Q  60 gagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataagggggagtgtctattcatttataagggttgcgtactc 159  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |     
T  33721324 gagaagaacctagagagagatttcaacggtagaaattcatctattctgcaaaactagagataagggggagtgtttattcatttataagggttgcgtattt 33721225  T
Q  160 atgtgggtagtgaagggtt 178  Q
    |||||||||||||||||||    
T  33721224 atgtgggtagtgaagggtt 33721206  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 3387330 - 3387290
Alignment:
Q  143 ataagggttgcgtactcatgtgggtagtgaagggttgttaa 183  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  3387330 ataagggttgtgtactcatgtgggtagtgaagggttgttaa 3387290  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 18147670 - 18147732
Alignment:
Q  123 gggggagtgtctattcatttataagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    |||||||| |||||||||  |||||||||| ||||||||||||||||||||   ||||||||||    
T  18147670 gggggagtctctattcatc-ataagggttgtgtactcatgtgggtagtgaaaaattgttaattt 18147732  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 11508795 - 11508837
Alignment:
Q  144 taagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||    
T  11508795 taagggttgtgtaatcatgtggatagtgaagggttgttaattt 11508837  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 186
Target Start/End: Original strand, 15777344 - 15777465
Alignment:
Q  60 gagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataagggggagtgtctattcatttataagggttgcgtactc 159  Q
    |||||||||||||||||||||||| || |||| ||||||||  ||  || ||||||||| ||||||||||| | |||||| | |||||||||| |||||     
T  15777344 gagaagaacctagagagagatttc-accgtaggaatttatcacttttgc-aaactagaggtaagggggagt-tttattca-tcataagggttgtgtactt 15777439  T
Q  160 atgtgggtagtgaagggttgttaattt 186  Q
    |||||||||||||| ||||||||||||    
T  15777440 atgtgggtagtgaa-ggttgttaattt 15777465  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 9733706 - 9733748
Alignment:
Q  144 taagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  9733706 taagggttgtgtactcatgtggatagtgaagggttgttaattt 9733748  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 49969034 - 49969077
Alignment:
Q  143 ataagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||    
T  49969034 ataagggttgtgtactcgtgtgggtagtgaaaggttgttaattt 49969077  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 39176505 - 39176407
Alignment:
Q  89 tagaaatttatctattccgcaaaactagagataaggggg--agtgtctattcatttataagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    |||||| | ||| ||| ||||||||||||| ||| ||||  ||| |||||||||  |||||||||| |||||||||||||||||||| | ||||||||||    
T  39176505 tagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatc-ataagggttgtgtactcatgtgggtagtgaaagattgttaattt 39176407  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 24068106 - 24068063
Alignment:
Q  143 ataagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    |||||||||| |||| | ||||||||||||||||||||||||||    
T  24068106 ataagggttgtgtacgcgtgtgggtagtgaagggttgttaattt 24068063  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 160435 - 160392
Alignment:
Q  143 ataagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    ||||||||||  ||||||||||||||||||||||||||||||||    
T  160435 ataagggttgtttactcatgtgggtagtgaagggttgttaattt 160392  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 19769096 - 19769158
Alignment:
Q  123 gggggagtgtctattcatttataagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    |||||||| |||||||||  |||||||||| |||||||||||||||||||| | ||||||||||    
T  19769096 gggggagtctctattcatc-ataagggttgtgtactcatgtgggtagtgaaagattgttaattt 19769158  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 19400971 - 19400930
Alignment:
Q  143 ataagggttgcgtactcatgtgggtagtgaagggttgttaat 184  Q
    |||||||||| |||||| ||||||||||||| ||||||||||    
T  19400971 ataagggttgtgtactcgtgtgggtagtgaaaggttgttaat 19400930  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 23974213 - 23974088
Alignment:
Q  60 gagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataa--gggggagtgtctattcatttataagggttgcgtac 157  Q
    |||||||||||||||| |||||||| || ||| || | ||| |||| ||||| |||||| |||  |||||||| | |||||||  ||||||| || |||     
T  23974213 gagaagaacctagagaaagatttcaccg-taggaaatcatcaattctgcaaa-ctagaggtaatggggggagtttttattcatc-ataagggctgtgtat 23974117  T
Q  158 tcatgtgggtagtgaagggttgttaattt 186  Q
    |||||||| ||||||||||||||||||||    
T  23974116 tcatgtggatagtgaagggttgttaattt 23974088  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 11153854 - 11153779
Alignment:
Q  111 aactagagataa-gggggagtgtctattcatttataagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    |||||||| ||| |||||||| |||||||||  |||||||||| ||||||||||||||||||||   ||||||||||    
T  11153854 aactagaggtaatgggggagtctctattcatc-ataagggttgtgtactcatgtgggtagtgaaaaattgttaattt 11153779  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 15239992 - 15240036
Alignment:
Q  143 ataagggttgcgtactcatgtgggtagtgaagggttgttaatttc 187  Q
    |||||||||| || |||||||| ||||||||||||||||||||||    
T  15239992 ataagggttgtgtgctcatgtgtgtagtgaagggttgttaatttc 15240036  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 186
Target Start/End: Original strand, 46224426 - 46224457
Alignment:
Q  155 tactcatgtgggtagtgaagggttgttaattt 186  Q
    ||||||||||||||||||||||||||||||||    
T  46224426 tactcatgtgggtagtgaagggttgttaattt 46224457  T

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Target: scaffold0461 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 12349 - 12317
Alignment:
Q  154 gtactcatgtgggtagtgaagggttgttaattt 186  Q
    |||||||||||||||||||||||||||||||||    
T  12349 gtactcatgtgggtagtgaagggttgttaattt 12317  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 91115 - 91083
Alignment:
Q  154 gtactcatgtgggtagtgaagggttgttaattt 186  Q
    |||||||||||||||||||||||||||||||||    
T  91115 gtactcatgtgggtagtgaagggttgttaattt 91083  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 41136794 - 41136835
Alignment:
Q  145 aagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    ||||||||  ||||||||||||||||||| ||||||||||||    
T  41136794 aagggttgtatactcatgtgggtagtgaatggttgttaattt 41136835  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 9883323 - 9883280
Alignment:
Q  143 ataagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||    
T  9883323 ataaggattgtgtactcatgtgggtagttaagggttgttaattt 9883280  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 40391465 - 40391396
Alignment:
Q  60 gagaagaacctagagagagatttcaacggtagaaatttatctattccgcaaaactagagataagggggagt 130  Q
    |||||||||||| ||||||||||||||  ||||||   ||| ||| ||||||||||||| |||||||||||    
T  40391465 gagaagaacctaaagagagatttcaac-ttagaaaaccatcaatttcgcaaaactagaggtaagggggagt 40391396  T

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Target: scaffold0120 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 29187 - 29145
Alignment:
Q  144 taagggttgcgtactcatgtgggtagtgaagggttgttaattt 186  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||    
T  29187 taagggttgtgtaatcatgtgggtagtgaagggtttttaattt 29145  T

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