View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_26 (Length: 277)
Name: NF1346_low_26
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 4621020 - 4620750
Alignment:
| Q |
1 |
cataagaagtgtatttgcatctaatccaaattttgctttgctcccaagcaatcaaattcctccacttcacttcagttgtttcc-----atatagtggtgg |
95 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
4621020 |
cataagaagtgcatttgcatctaatccaaattttgctttgctcccaagcaatcaaattcctccacttaacttcagttgtttccttgatatatagtggtgg |
4620921 |
T |
|
| Q |
96 |
aatatccaactctccagaatcactaaaacttatatcaaaatcaaacatatcaaccaacttgtgctgattttgatttgtgctatttaatttagcgcgaatc |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
4620920 |
aatatccaactctccagaatcactaaaacttatatcaaaatcaaacatatccaccaacttatgctgattttgatttgtgctatttaatttagctcgaatt |
4620821 |
T |
|
| Q |
196 |
attaccccagaagcacgaagctttgtagcacaacgcatcaattccagcttcgcttttttcccttcatattg |
266 |
Q |
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||||||||||||||||| |||||||||||||| |||| ||||| |||||||| ||||||||||| ||||| |
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| T |
4620820 |
attaccccagaagcacggagctttgtagcacagcgcaataattctagcttcgcctttttcccttcgtattg |
4620750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 4591480 - 4591217
Alignment:
| Q |
9 |
gtgtatttgcatctaatccaaattttgctttgctcccaagcaatcaaattcctccacttcacttcagttgtttcc-----atatagtggtggaatatcca |
103 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| || ||||||| || |
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| T |
4591480 |
gtgtatttgcatctaatccaatttttgctttgctcccaagcaatcaaattcctccacttcacttccgttgtttctttaatatatagcggcggaatattca |
4591381 |
T |
|
| Q |
104 |
actctccagaatcactaaaacttatatcaaaatcaaacatatcaaccaacttgtgctgattttgatttgtgctatttaattt---agcgcgaatcattac |
200 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||| |||||||||| ||| |||||| |||| |
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| T |
4591380 |
actctccctaatcactaaaacttatatcaaaatcaaatatatccaccaactcatgttgattttgatttgtgatatttaatttagcagctcgaatcgttac |
4591281 |
T |
|
| Q |
201 |
cccagaagcacgaagctttgtagcacaacgcatcaattccagcttcgcttttttcccttcatat |
264 |
Q |
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|||||||||||||||||||||||||||| | |||||| ||||| |||||||| ||||||||| |
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| T |
4591280 |
cccagaagcacgaagctttgtagcacaatataacaattctagctttgctttttttccttcatat |
4591217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 4555187 - 4554917
Alignment:
| Q |
1 |
cataagaagtgtatttgcatctaatccaaattttgctttgctcccaagcaatcaaattcctccacttcacttcagttgtttcc-----atatagtggtgg |
95 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
4555187 |
cataggaagtgtatttgcatttactccaaattttgctttgctcccaagcaatcaaattcctccacttcacttccgttctttccttaatatatagtggtga |
4555088 |
T |
|
| Q |
96 |
aatatccaactctccagaatcactaaaacttatatcaaaatcaaacatatcaaccaacttgtgctgattttgatttgtgctatttaatttagcgcgaatc |
195 |
Q |
| |
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||| |||||| ||| ||||||||||||| | |||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||| |||||| |
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| T |
4555087 |
aattatcaactccccaaaatcactaaaactcacatcaaaatcaaacatatccaccaacttctgttgagattgatttgtgctatttaatttagctcgaatc |
4554988 |
T |
|
| Q |
196 |
attaccccagaagcacgaagctttgtagcacaacgcatcaattccagcttcgcttttttcccttcatattgttgg |
270 |
Q |
| |
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|| || | || | |||||||||||||||||| || ||||| |||||||| |||||||||||| |||||||| |
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| T |
4554987 |
ataacac----agtatgaagctttgtagcacaacacagtaattctagcttcgcctttttcccttcacattgttgg |
4554917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 14193281 - 14193210
Alignment:
| Q |
12 |
tatttgcatctaatccaaattttgctttgctcccaagcaatcaaattcctccacttcacttcagttgtttcc |
83 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
14193281 |
tatttgcatctaatgttaattttgctctgctcccaagcaatcaaattcctccacctcacttccgttgtttcc |
14193210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 18521985 - 18521903
Alignment:
| Q |
1 |
cataagaagtgtatttgcatctaatccaaattttgctttgctcccaagcaatcaaattcctccacttcacttcagttgtttcc |
83 |
Q |
| |
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|||| ||||||||||||||||| | ||||||| | | || |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18521985 |
catatgaagtgtatttgcatcttacccaaattctattctgttcccaagcaatcaaattcctccacttcacttccgttgtttcc |
18521903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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