View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1346_low_3 (Length: 540)
Name: NF1346_low_3
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1346_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 71 - 540
Target Start/End: Complemental strand, 36764792 - 36764331
Alignment:
| Q |
71 |
tcgaagaatatcaatagaataattcattttatgtatttatgtatatgttaatctatctatctatgatctgattgattcatgtatttatgtaattatgtag |
170 |
Q |
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| T |
36764792 |
tcgaataatatcaatagaataattcattttatgtatttatgtatatgtttatctatctatctatgatctgattgattcatgtatttatgta--------g |
36764701 |
T |
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| Q |
171 |
agagattcctccgtcgttagatttggatctctccaccatggaaaacattgccgcgcaactaaagcgcggcatctcgcgccaattctcctccggctcttta |
270 |
Q |
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| T |
36764700 |
agagattcctccgtcgttagatttggatctctccaccatggaaaacattgccgcgcaactaaggcgcggcatctcgcgccaattctcctccggctcttta |
36764601 |
T |
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| Q |
271 |
cgcaaaactctcagccgtcaattcacacgtcaagcatcgctcgatccacgtcggaacaatctccgattcagcttcggtcgtcaatcatcgctggacccga |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764600 |
cgcaaaactctcagccgtcaattcacacgtcaagcatcgctcgatccacgtcggaacaatctccgattcagcttcggtcgtcaatcatcgctggacccga |
36764501 |
T |
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| Q |
371 |
tccgacggagtccaggtgatgatgaagaccaggcggaactcaccgtaccggagaatctcgattccaccatgcagcttctcttcatggcgtgtcgtggtga |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764500 |
tccgacggagtccaggtgatgatgaagaccaggcggaactcaccgtaccggagaatctcgattccaccatgcagcttctcttcatggcgtgtcgtggtga |
36764401 |
T |
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| Q |
471 |
tgttaaaggggttgaggatttgcttaacgaaggaattgatgttaatagcattgatcttgatggccgtact |
540 |
Q |
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| T |
36764400 |
tgttaaaggggttgaggatttgcttaacgaaggaattgatgttaatagcattgatcttgatggccgtact |
36764331 |
T |
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