View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1346_low_31 (Length: 261)

Name: NF1346_low_31
Description: NF1346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1346_low_31
NF1346_low_31
[»] chr4 (1 HSPs)
chr4 (33-241)||(26721174-26721382)
[»] chr2 (1 HSPs)
chr2 (33-241)||(2986291-2986501)
[»] chr1 (1 HSPs)
chr1 (33-241)||(45117563-45117773)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 26721174 - 26721382
Alignment:
Q  33 ccctgtttttgctgttcaaaaagtattttgttaggtctttagtttttattctaaaaaatggtttcttaaattacaaatgaaagtaatttgttgttctgat 132  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26721174 ccctgtttttgctgttcaaaaagtatttagttaggtctttaatttttattctaaaaattggtttcttaaattacaaatgaaagtaatttgttgttctgat 26721273  T
Q  133 tgattttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggtttatt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26721274 tgattttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggtttatt 26721373  T
Q  233 ttgtctgtg 241  Q
    |||| ||||    
T  26721374 ttgtgtgtg 26721382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 2986291 - 2986501
Alignment:
Q  33 ccctgtttttgctgttcaaaaagtattttgttaggtctttagtttttattctaaaaaatggtttcttaaattacaaatgaaagtaatttgttgttctgat 132  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2986291 ccctgtttttgctgttcaaaaagtatttagttaggtctttaatttttcttctaaaaattggtttcttaaattacaaatgaaagtaatttgttgttctgat 2986390  T
Q  133 tga--ttttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggttta 230  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2986391 tgagtttttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggttta 2986490  T
Q  231 ttttgtctgtg 241  Q
    |||||| ||||    
T  2986491 ttttgtgtgtg 2986501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 45117773 - 45117563
Alignment:
Q  33 ccctgtttttgctgttcaaaaagtattttgttaggtctttagtttttattctaaaaaatggtttcttaaattacaaatgaaagtaatttgttgttctgat 132  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45117773 ccctgtttttgctgttcaaaaagtatttagttaggtctttaatttttcttctaaaaattggtttcttaaattacaaatgaaagtaatttgttgttctgat 45117674  T
Q  133 tga--ttttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggttta 230  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45117673 tgagtttttagttttcatccttttcaatttccaaatgttatagtgaatttatatataggattagatcaataatatataaattttagtaagtttgggttta 45117574  T
Q  231 ttttgtctgtg 241  Q
    |||||| ||||    
T  45117573 ttttgtgtgtg 45117563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University